miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19515 5' -62.7 NC_004685.1 + 19101 0.66 0.456901
Target:  5'- cGCGaUCaGCUCGacGCCGcgcuggaggCGGCGCCGg -3'
miRNA:   3'- -CGCcGG-CGAGCaaCGGCa--------GCCGCGGC- -5'
19515 5' -62.7 NC_004685.1 + 42481 0.66 0.456901
Target:  5'- aGCGGCaccaGCUucagcuucaCGgcaGCCGcCGGUGCUGa -3'
miRNA:   3'- -CGCCGg---CGA---------GCaa-CGGCaGCCGCGGC- -5'
19515 5' -62.7 NC_004685.1 + 19682 0.66 0.456901
Target:  5'- uGUGGCUGCaCGagcgGCCGUgGcGgGCCGa -3'
miRNA:   3'- -CGCCGGCGaGCaa--CGGCAgC-CgCGGC- -5'
19515 5' -62.7 NC_004685.1 + 9356 0.66 0.456901
Target:  5'- cGCGGCCGCagcaCGa-GCUGaucuucaacgCGGCGCUGa -3'
miRNA:   3'- -CGCCGGCGa---GCaaCGGCa---------GCCGCGGC- -5'
19515 5' -62.7 NC_004685.1 + 12809 0.66 0.454145
Target:  5'- aGCGGCUGg-CGggccgUGCCGUCGacaagaagguugucGCGaCCGg -3'
miRNA:   3'- -CGCCGGCgaGCa----ACGGCAGC--------------CGC-GGC- -5'
19515 5' -62.7 NC_004685.1 + 2959 0.66 0.448659
Target:  5'- aGCGGUCGCaccagcguUCGguccagauggcgcgGUCGUCGGCGUg- -3'
miRNA:   3'- -CGCCGGCG--------AGCaa------------CGGCAGCCGCGgc -5'
19515 5' -62.7 NC_004685.1 + 50324 0.66 0.447749
Target:  5'- aGCgGGCUGC-CGggGCCGacuucgccgCGGCGCa- -3'
miRNA:   3'- -CG-CCGGCGaGCaaCGGCa--------GCCGCGgc -5'
19515 5' -62.7 NC_004685.1 + 34579 0.66 0.447749
Target:  5'- cGCGGCCGa-CGcUGCCGa--GCGCCu -3'
miRNA:   3'- -CGCCGGCgaGCaACGGCagcCGCGGc -5'
19515 5' -62.7 NC_004685.1 + 17097 0.66 0.447749
Target:  5'- aGCuGGUCGagUCGcaGCgGuUCGGCGCCGa -3'
miRNA:   3'- -CG-CCGGCg-AGCaaCGgC-AGCCGCGGC- -5'
19515 5' -62.7 NC_004685.1 + 141 0.66 0.447749
Target:  5'- cGCGGCUGC-CGgggugGCCGgggagcugcUCGGCuuGCCc -3'
miRNA:   3'- -CGCCGGCGaGCaa---CGGC---------AGCCG--CGGc -5'
19515 5' -62.7 NC_004685.1 + 107 0.66 0.447749
Target:  5'- uUGGCCGCUag--GCgGUagCGGCGaCCGg -3'
miRNA:   3'- cGCCGGCGAgcaaCGgCA--GCCGC-GGC- -5'
19515 5' -62.7 NC_004685.1 + 42002 0.66 0.438699
Target:  5'- gGCGGCCGCuUCGcc-CCGaUCGaCGCUGa -3'
miRNA:   3'- -CGCCGGCG-AGCaacGGC-AGCcGCGGC- -5'
19515 5' -62.7 NC_004685.1 + 3233 0.66 0.438699
Target:  5'- cGgGGUCGgggUCGg-GCCGgaccaUCGGCGCCGg -3'
miRNA:   3'- -CgCCGGCg--AGCaaCGGC-----AGCCGCGGC- -5'
19515 5' -62.7 NC_004685.1 + 48356 0.66 0.438699
Target:  5'- gGCGGUgGCauugcCGUaGCCGaCaGCGCCGg -3'
miRNA:   3'- -CGCCGgCGa----GCAaCGGCaGcCGCGGC- -5'
19515 5' -62.7 NC_004685.1 + 50873 0.66 0.438699
Target:  5'- cGCaGCCGUcggCgGUUGCgCG-CGGUGCCGc -3'
miRNA:   3'- -CGcCGGCGa--G-CAACG-GCaGCCGCGGC- -5'
19515 5' -62.7 NC_004685.1 + 64169 0.66 0.4378
Target:  5'- aGgGGCCGaguucgaCUUGgcggUGCCG-CGGUGUCGa -3'
miRNA:   3'- -CgCCGGC-------GAGCa---ACGGCaGCCGCGGC- -5'
19515 5' -62.7 NC_004685.1 + 36943 0.66 0.429755
Target:  5'- gGCGGCCGgUCcaccacCCGgcUCGGCuGCCGa -3'
miRNA:   3'- -CGCCGGCgAGcaac--GGC--AGCCG-CGGC- -5'
19515 5' -62.7 NC_004685.1 + 39403 0.66 0.420919
Target:  5'- -aGGCCaGgUUGUcGUagGUCGGCGCCGc -3'
miRNA:   3'- cgCCGG-CgAGCAaCGg-CAGCCGCGGC- -5'
19515 5' -62.7 NC_004685.1 + 29136 0.66 0.420041
Target:  5'- cGCGGUCcacuccaGCUcCGcUGCgGUCGGauaGCCGa -3'
miRNA:   3'- -CGCCGG-------CGA-GCaACGgCAGCCg--CGGC- -5'
19515 5' -62.7 NC_004685.1 + 18885 0.66 0.412193
Target:  5'- cGCGGUgaCGCucaucggcaUCGUgGCCGaCGcGCGCCGc -3'
miRNA:   3'- -CGCCG--GCG---------AGCAaCGGCaGC-CGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.