Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 19516 | 3' | -56.5 | NC_004685.1 | + | 62846 | 0.66 | 0.770541 |
|
Target: 5'- cGGgGUcacGGCGGgagcCGGUGcgccugGGGCGGUgCGa -3' miRNA: 3'- -CCaCA---UCGCCa---GCCACa-----UCCGCCA-GC- -5' |
|||||||
| 19516 | 3' | -56.5 | NC_004685.1 | + | 26920 | 0.66 | 0.75082 |
|
Target: 5'- gGGUGUAGU------UGUAGGCGGUCu -3' miRNA: 3'- -CCACAUCGccagccACAUCCGCCAGc -5' |
|||||||
| 19516 | 3' | -56.5 | NC_004685.1 | + | 3682 | 0.67 | 0.710116 |
|
Target: 5'- ----cGGCGGcuUUGGUGUGGGUGG-CGc -3' miRNA: 3'- ccacaUCGCC--AGCCACAUCCGCCaGC- -5' |
|||||||
| 19516 | 3' | -56.5 | NC_004685.1 | + | 62902 | 0.67 | 0.689296 |
|
Target: 5'- cGGg--GGCGG--GGUGUAGGUGGcCGc -3' miRNA: 3'- -CCacaUCGCCagCCACAUCCGCCaGC- -5' |
|||||||
| 19516 | 3' | -56.5 | NC_004685.1 | + | 10496 | 0.67 | 0.678805 |
|
Target: 5'- gGGUGU-GC---UGGaGUGGGCGGUCGg -3' miRNA: 3'- -CCACAuCGccaGCCaCAUCCGCCAGC- -5' |
|||||||
| 19516 | 3' | -56.5 | NC_004685.1 | + | 43045 | 0.68 | 0.615325 |
|
Target: 5'- uGGUGUGcucgucgguGCGG-CGGUGcucgccGCGGUCGg -3' miRNA: 3'- -CCACAU---------CGCCaGCCACauc---CGCCAGC- -5' |
|||||||
| 19516 | 3' | -56.5 | NC_004685.1 | + | 32274 | 0.69 | 0.541968 |
|
Target: 5'- cGGUGgcGCGGgCGGUccugGUGGcGCGG-CGa -3' miRNA: 3'- -CCACauCGCCaGCCA----CAUC-CGCCaGC- -5' |
|||||||
| 19516 | 3' | -56.5 | NC_004685.1 | + | 56161 | 0.73 | 0.371726 |
|
Target: 5'- -----cGCGGUCGGUGccucgucgGGGCGGUCc -3' miRNA: 3'- ccacauCGCCAGCCACa-------UCCGCCAGc -5' |
|||||||
| 19516 | 3' | -56.5 | NC_004685.1 | + | 52952 | 1.12 | 0.000773 |
|
Target: 5'- cGGUGUAGCGGUCGGUGUAGGCGGUCGg -3' miRNA: 3'- -CCACAUCGCCAGCCACAUCCGCCAGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home