miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19516 5' -56.7 NC_004685.1 + 52398 0.66 0.706667
Target:  5'- -aUGGC-CCACUGCuCGAaGCCGUGGCc -3'
miRNA:   3'- uaGCUGaGGUGGUG-GCUgCGGUACUG- -5'
19516 5' -56.7 NC_004685.1 + 51156 0.66 0.699264
Target:  5'- cUCGACUUCGCgguugcggacgcgCACCGAauccucggggcucagUGCCAUGAa -3'
miRNA:   3'- uAGCUGAGGUG-------------GUGGCU---------------GCGGUACUg -5'
19516 5' -56.7 NC_004685.1 + 53058 0.66 0.696082
Target:  5'- gGUUGcacGCUCCACCAgCGACGgCcgGGu -3'
miRNA:   3'- -UAGC---UGAGGUGGUgGCUGCgGuaCUg -5'
19516 5' -56.7 NC_004685.1 + 47048 0.66 0.696082
Target:  5'- -cCGGCUUCACCucgACUGugauCGCCAUGcCa -3'
miRNA:   3'- uaGCUGAGGUGG---UGGCu---GCGGUACuG- -5'
19516 5' -56.7 NC_004685.1 + 32034 0.66 0.674742
Target:  5'- aGUCGAacgUCCAuCCGCCGcCGCCcgcGACc -3'
miRNA:   3'- -UAGCUg--AGGU-GGUGGCuGCGGua-CUG- -5'
19516 5' -56.7 NC_004685.1 + 46974 0.66 0.674742
Target:  5'- cUCGGCgguggccucgUCCA-CGCCGAcCGCgGUGACa -3'
miRNA:   3'- uAGCUG----------AGGUgGUGGCU-GCGgUACUG- -5'
19516 5' -56.7 NC_004685.1 + 47082 0.66 0.674742
Target:  5'- gGUCGcCaCCAUCAUCGuCGCCGUGGu -3'
miRNA:   3'- -UAGCuGaGGUGGUGGCuGCGGUACUg -5'
19516 5' -56.7 NC_004685.1 + 31160 0.66 0.674742
Target:  5'- -gCGACgCuCGCCGCCG-CGCCGguccugGGCg -3'
miRNA:   3'- uaGCUGaG-GUGGUGGCuGCGGUa-----CUG- -5'
19516 5' -56.7 NC_004685.1 + 37138 0.66 0.664009
Target:  5'- gAUCuGCUCCggcgugGCCggGCCGACGCCggGAa -3'
miRNA:   3'- -UAGcUGAGG------UGG--UGGCUGCGGuaCUg -5'
19516 5' -56.7 NC_004685.1 + 8204 0.66 0.664009
Target:  5'- --gGGCUCCAuCCugUGAUGCCc-GACg -3'
miRNA:   3'- uagCUGAGGU-GGugGCUGCGGuaCUG- -5'
19516 5' -56.7 NC_004685.1 + 23867 0.66 0.664009
Target:  5'- --aGAUUCUgaacgagggGCCgGCCGACGCCGaGACg -3'
miRNA:   3'- uagCUGAGG---------UGG-UGGCUGCGGUaCUG- -5'
19516 5' -56.7 NC_004685.1 + 4088 0.67 0.653248
Target:  5'- aAUCGGC-CCugugGCCGCUGAUGCC--GACa -3'
miRNA:   3'- -UAGCUGaGG----UGGUGGCUGCGGuaCUG- -5'
19516 5' -56.7 NC_004685.1 + 65938 0.67 0.642468
Target:  5'- -cCGACUgCAUCGCUGAggggauCGCCAacUGGCg -3'
miRNA:   3'- uaGCUGAgGUGGUGGCU------GCGGU--ACUG- -5'
19516 5' -56.7 NC_004685.1 + 22868 0.67 0.642468
Target:  5'- uGUCGGCgCCcgGCUGCCGACaucgGCCGcUGACg -3'
miRNA:   3'- -UAGCUGaGG--UGGUGGCUG----CGGU-ACUG- -5'
19516 5' -56.7 NC_004685.1 + 64513 0.67 0.631679
Target:  5'- -gCGGCuUCCACCugaCGACGaCGUGGCc -3'
miRNA:   3'- uaGCUG-AGGUGGug-GCUGCgGUACUG- -5'
19516 5' -56.7 NC_004685.1 + 68308 0.67 0.62089
Target:  5'- gAUCGAgaCCAgCACCGGCGgCAgGAUc -3'
miRNA:   3'- -UAGCUgaGGUgGUGGCUGCgGUaCUG- -5'
19516 5' -56.7 NC_004685.1 + 48315 0.67 0.62089
Target:  5'- -aCGGCacccgCCGCCugccagaucGCCGACGCCAcguugucggcggUGGCa -3'
miRNA:   3'- uaGCUGa----GGUGG---------UGGCUGCGGU------------ACUG- -5'
19516 5' -56.7 NC_004685.1 + 16108 0.67 0.62089
Target:  5'- --gGGCaaCACCGCCGACGCgCAcGGCc -3'
miRNA:   3'- uagCUGagGUGGUGGCUGCG-GUaCUG- -5'
19516 5' -56.7 NC_004685.1 + 35250 0.67 0.62089
Target:  5'- cAUCGACgaCAUCACCcGCGCCuacgggGUGACg -3'
miRNA:   3'- -UAGCUGagGUGGUGGcUGCGG------UACUG- -5'
19516 5' -56.7 NC_004685.1 + 65031 0.67 0.61011
Target:  5'- -aCGGCacgCCAUCcUCGACGCCGUaGGCg -3'
miRNA:   3'- uaGCUGa--GGUGGuGGCUGCGGUA-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.