Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19517 | 5' | -57.2 | NC_004685.1 | + | 59564 | 0.69 | 0.508969 |
Target: 5'- gGCGUgCCCGuCGAGCgcGUUCUCGucGCCg -3' miRNA: 3'- aUGCA-GGGCcGCUCGa-CAGGAGU--UGG- -5' |
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19517 | 5' | -57.2 | NC_004685.1 | + | 33075 | 0.69 | 0.488845 |
Target: 5'- -uUGcCCgCGGCGAGCgcacccgccagGUCCUCGGCg -3' miRNA: 3'- auGCaGG-GCCGCUCGa----------CAGGAGUUGg -5' |
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19517 | 5' | -57.2 | NC_004685.1 | + | 8612 | 0.69 | 0.488845 |
Target: 5'- -gUGUUCC-GUGAGCUGUCCaUCGGCg -3' miRNA: 3'- auGCAGGGcCGCUCGACAGG-AGUUGg -5' |
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19517 | 5' | -57.2 | NC_004685.1 | + | 40138 | 0.69 | 0.469102 |
Target: 5'- --gGUCauGGCG-GCgaUGUCCUCGGCCa -3' miRNA: 3'- augCAGggCCGCuCG--ACAGGAGUUGG- -5' |
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19517 | 5' | -57.2 | NC_004685.1 | + | 39880 | 0.69 | 0.468126 |
Target: 5'- cACGgaacagCCCGGCGA--UGUCCUCGaagaacaccuugaGCCg -3' miRNA: 3'- aUGCa-----GGGCCGCUcgACAGGAGU-------------UGG- -5' |
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19517 | 5' | -57.2 | NC_004685.1 | + | 5352 | 0.7 | 0.459385 |
Target: 5'- aGCGUCCaCGaGCcgaGGGUUG-CCUCGGCCc -3' miRNA: 3'- aUGCAGG-GC-CG---CUCGACaGGAGUUGG- -5' |
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19517 | 5' | -57.2 | NC_004685.1 | + | 27140 | 0.7 | 0.449776 |
Target: 5'- gGCGUgCCUGGCGAcGCUGUgCggUCAuagGCCa -3' miRNA: 3'- aUGCA-GGGCCGCU-CGACAgG--AGU---UGG- -5' |
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19517 | 5' | -57.2 | NC_004685.1 | + | 10224 | 0.7 | 0.449776 |
Target: 5'- aGCuGUCCaaCGGCGAGCUGaCCgucaUCGACUg -3' miRNA: 3'- aUG-CAGG--GCCGCUCGACaGG----AGUUGG- -5' |
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19517 | 5' | -57.2 | NC_004685.1 | + | 66884 | 0.7 | 0.430896 |
Target: 5'- gGCaGUCCCacaGCGGGUcGUCCUCGGCg -3' miRNA: 3'- aUG-CAGGGc--CGCUCGaCAGGAGUUGg -5' |
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19517 | 5' | -57.2 | NC_004685.1 | + | 67966 | 0.7 | 0.421632 |
Target: 5'- aACGUCCCGaCGGGgUGUUCggaAACCg -3' miRNA: 3'- aUGCAGGGCcGCUCgACAGGag-UUGG- -5' |
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19517 | 5' | -57.2 | NC_004685.1 | + | 5573 | 0.71 | 0.403469 |
Target: 5'- gGCGagCCGGUGAGCUGggcggaugaCCcCGACCa -3' miRNA: 3'- aUGCagGGCCGCUCGACa--------GGaGUUGG- -5' |
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19517 | 5' | -57.2 | NC_004685.1 | + | 38827 | 0.71 | 0.377173 |
Target: 5'- cGCGacUCCuCGGCGcgaaccuuGGC-GUCCUCGACCu -3' miRNA: 3'- aUGC--AGG-GCCGC--------UCGaCAGGAGUUGG- -5' |
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19517 | 5' | -57.2 | NC_004685.1 | + | 60351 | 0.71 | 0.377173 |
Target: 5'- -uCGUCgCCGGCGAGUcggGUUC-CGACCu -3' miRNA: 3'- auGCAG-GGCCGCUCGa--CAGGaGUUGG- -5' |
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19517 | 5' | -57.2 | NC_004685.1 | + | 10394 | 0.72 | 0.32045 |
Target: 5'- gACG-CCgCGGUGGGcCUGUCCUCAcaggaggugcagACCa -3' miRNA: 3'- aUGCaGG-GCCGCUC-GACAGGAGU------------UGG- -5' |
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19517 | 5' | -57.2 | NC_004685.1 | + | 22621 | 0.72 | 0.319687 |
Target: 5'- gGCGaccgccggggugaUCCCGGUGGGCUGcgucgccgCUUCGGCCa -3' miRNA: 3'- aUGC-------------AGGGCCGCUCGACa-------GGAGUUGG- -5' |
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19517 | 5' | -57.2 | NC_004685.1 | + | 33135 | 0.73 | 0.305462 |
Target: 5'- cGCGaagaagCCUGGCGAGCUGUCguucUUCGACa -3' miRNA: 3'- aUGCa-----GGGCCGCUCGACAG----GAGUUGg -5' |
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19517 | 5' | -57.2 | NC_004685.1 | + | 9115 | 0.76 | 0.184396 |
Target: 5'- aACGUUgCGcGCGAGCUGUCg-CAGCCg -3' miRNA: 3'- aUGCAGgGC-CGCUCGACAGgaGUUGG- -5' |
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19517 | 5' | -57.2 | NC_004685.1 | + | 36563 | 0.77 | 0.157355 |
Target: 5'- cGCG-CCCGGCGAcGCggGUCCgaUCAACCu -3' miRNA: 3'- aUGCaGGGCCGCU-CGa-CAGG--AGUUGG- -5' |
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19517 | 5' | -57.2 | NC_004685.1 | + | 15457 | 0.79 | 0.126887 |
Target: 5'- -cCGUCCCGGCGAGCcccUGUUCggaAACCg -3' miRNA: 3'- auGCAGGGCCGCUCG---ACAGGag-UUGG- -5' |
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19517 | 5' | -57.2 | NC_004685.1 | + | 54261 | 1.1 | 0.000791 |
Target: 5'- gUACGUCCCGGCGAGCUGUCCUCAACCu -3' miRNA: 3'- -AUGCAGGGCCGCUCGACAGGAGUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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