miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19518 3' -56 NC_004685.1 + 65102 0.66 0.751445
Target:  5'- --aCGGCCUGCaUCAg--CGCgCGGUCg -3'
miRNA:   3'- ugaGCCGGACGcAGUagaGUG-GCUAG- -5'
19518 3' -56 NC_004685.1 + 40987 0.66 0.751445
Target:  5'- uGCUCGGCgUGCG-CAcUCcugguggcgUCGCCGAc- -3'
miRNA:   3'- -UGAGCCGgACGCaGU-AG---------AGUGGCUag -5'
19518 3' -56 NC_004685.1 + 35110 0.66 0.751445
Target:  5'- cGCUCGGCa-GCGUCGgccgCggUCAUCgGAUCg -3'
miRNA:   3'- -UGAGCCGgaCGCAGUa---G--AGUGG-CUAG- -5'
19518 3' -56 NC_004685.1 + 46281 0.66 0.74018
Target:  5'- aGCUCGuugaacaGCaccCGUCGUCUCACCGGcaUCg -3'
miRNA:   3'- -UGAGC-------CGgacGCAGUAGAGUGGCU--AG- -5'
19518 3' -56 NC_004685.1 + 32254 0.66 0.730868
Target:  5'- aACgCGGCC-GCGUCggC-CGCCGGUg -3'
miRNA:   3'- -UGaGCCGGaCGCAGuaGaGUGGCUAg -5'
19518 3' -56 NC_004685.1 + 68763 0.66 0.720432
Target:  5'- gACUgCGGCCUGUacgaaCGgcgaUCACCGAUCc -3'
miRNA:   3'- -UGA-GCCGGACGca---GUag--AGUGGCUAG- -5'
19518 3' -56 NC_004685.1 + 2612 0.66 0.720432
Target:  5'- cGCUCGGCCUGC-UCGg--CAgCGAc- -3'
miRNA:   3'- -UGAGCCGGACGcAGUagaGUgGCUag -5'
19518 3' -56 NC_004685.1 + 21524 0.66 0.720432
Target:  5'- cUUCGGCCaggGCGUCAUgggCUCGaucuCCGGUa -3'
miRNA:   3'- uGAGCCGGa--CGCAGUA---GAGU----GGCUAg -5'
19518 3' -56 NC_004685.1 + 22329 0.66 0.720432
Target:  5'- cCUCGGUCUGCGUgCGcUCgCGCUGuUCg -3'
miRNA:   3'- uGAGCCGGACGCA-GU-AGaGUGGCuAG- -5'
19518 3' -56 NC_004685.1 + 54847 0.66 0.70991
Target:  5'- aGCUCGGCCUG-GUCGagguggCagACCGAc- -3'
miRNA:   3'- -UGAGCCGGACgCAGUa-----GagUGGCUag -5'
19518 3' -56 NC_004685.1 + 55391 0.67 0.688656
Target:  5'- cCUCGGCCaGCGUCg---CACCcucGGUCa -3'
miRNA:   3'- uGAGCCGGaCGCAGuagaGUGG---CUAG- -5'
19518 3' -56 NC_004685.1 + 40918 0.67 0.688656
Target:  5'- aGCUCGGCCUGCugg--CgcaGCUGAUCc -3'
miRNA:   3'- -UGAGCCGGACGcaguaGag-UGGCUAG- -5'
19518 3' -56 NC_004685.1 + 17506 0.67 0.676872
Target:  5'- gGCagUGGCCUGCGggUCAUCaacaacuUCGCCGGg- -3'
miRNA:   3'- -UGa-GCCGGACGC--AGUAG-------AGUGGCUag -5'
19518 3' -56 NC_004685.1 + 36799 0.67 0.667192
Target:  5'- cGCagGGCUggUGCGUCAUCaccggCACCGGc- -3'
miRNA:   3'- -UGagCCGG--ACGCAGUAGa----GUGGCUag -5'
19518 3' -56 NC_004685.1 + 61579 0.68 0.623962
Target:  5'- cCUCGGCCaGCG-CGUUgacCACCGAc- -3'
miRNA:   3'- uGAGCCGGaCGCaGUAGa--GUGGCUag -5'
19518 3' -56 NC_004685.1 + 19224 0.68 0.623962
Target:  5'- gUUUGGCCUGCGgu-UCgCGCCGAg- -3'
miRNA:   3'- uGAGCCGGACGCaguAGaGUGGCUag -5'
19518 3' -56 NC_004685.1 + 58095 0.68 0.591578
Target:  5'- --gCGGCCUGCG-CggCUCGCCGc-- -3'
miRNA:   3'- ugaGCCGGACGCaGuaGAGUGGCuag -5'
19518 3' -56 NC_004685.1 + 7794 0.69 0.570139
Target:  5'- --aCGGCCUGUGgCA-CUCgggGCCGGUCa -3'
miRNA:   3'- ugaGCCGGACGCaGUaGAG---UGGCUAG- -5'
19518 3' -56 NC_004685.1 + 6964 0.69 0.570139
Target:  5'- cGC-CGGCCU-CGUCGUCUCugacacgacACCGAg- -3'
miRNA:   3'- -UGaGCCGGAcGCAGUAGAG---------UGGCUag -5'
19518 3' -56 NC_004685.1 + 16109 0.7 0.517521
Target:  5'- -aUCGGCCUG-GUCA-CUgUGCCGGUCa -3'
miRNA:   3'- ugAGCCGGACgCAGUaGA-GUGGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.