miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19518 5' -55.5 NC_004685.1 + 24368 0.66 0.773101
Target:  5'- -gGAUCGGCaucuggGACAGCUCGauugccugGGCCAg- -3'
miRNA:   3'- agCUAGCCG------CUGUCGGGUa-------UCGGUac -5'
19518 5' -55.5 NC_004685.1 + 66921 0.66 0.763098
Target:  5'- gUCGcgCGccGCGGCAccguGCCCGacgagacgcUGGCCAUGu -3'
miRNA:   3'- -AGCuaGC--CGCUGU----CGGGU---------AUCGGUAC- -5'
19518 5' -55.5 NC_004685.1 + 30132 0.66 0.763098
Target:  5'- gCGGccgcacUCGGCccGGCAGCCCc-GGCCAUc -3'
miRNA:   3'- aGCU------AGCCG--CUGUCGGGuaUCGGUAc -5'
19518 5' -55.5 NC_004685.1 + 4746 0.66 0.763098
Target:  5'- gUGGUCGGCG-C-GCUCGUGGUCGg- -3'
miRNA:   3'- aGCUAGCCGCuGuCGGGUAUCGGUac -5'
19518 5' -55.5 NC_004685.1 + 51602 0.66 0.763098
Target:  5'- gUCGGUCaGCuucuGCGGCCCGaAGCCcagGUGg -3'
miRNA:   3'- -AGCUAGcCGc---UGUCGGGUaUCGG---UAC- -5'
19518 5' -55.5 NC_004685.1 + 20922 0.66 0.763098
Target:  5'- -aGAUUGGCGACAuGCUg--GGCCAc- -3'
miRNA:   3'- agCUAGCCGCUGU-CGGguaUCGGUac -5'
19518 5' -55.5 NC_004685.1 + 41616 0.66 0.752963
Target:  5'- cUCGGcgUCGGCGACcucAGCCUc-AGCCuUGg -3'
miRNA:   3'- -AGCU--AGCCGCUG---UCGGGuaUCGGuAC- -5'
19518 5' -55.5 NC_004685.1 + 29993 0.66 0.742708
Target:  5'- gUCGGUCGccuGCGACAgGCCC---GCCAg- -3'
miRNA:   3'- -AGCUAGC---CGCUGU-CGGGuauCGGUac -5'
19518 5' -55.5 NC_004685.1 + 39954 0.66 0.742708
Target:  5'- aCGG-CGGCGACcGCaCCucgGGCCAg- -3'
miRNA:   3'- aGCUaGCCGCUGuCG-GGua-UCGGUac -5'
19518 5' -55.5 NC_004685.1 + 48348 0.66 0.742708
Target:  5'- aCGuuGUCGGCGGUGGCauugCCGUAGCCGa- -3'
miRNA:   3'- aGC--UAGCCGCUGUCG----GGUAUCGGUac -5'
19518 5' -55.5 NC_004685.1 + 30559 0.67 0.721883
Target:  5'- -aGGUCGGCGGCAGUCUcagcucacuggGUucGCCGUu -3'
miRNA:   3'- agCUAGCCGCUGUCGGG-----------UAu-CGGUAc -5'
19518 5' -55.5 NC_004685.1 + 12079 0.67 0.721883
Target:  5'- aUCGucgCGGCcgGugAGCagGUGGCCGUGg -3'
miRNA:   3'- -AGCua-GCCG--CugUCGggUAUCGGUAC- -5'
19518 5' -55.5 NC_004685.1 + 25920 0.67 0.721883
Target:  5'- gUCGAcUCGGCGGguGCCCGacucgauGCCc-- -3'
miRNA:   3'- -AGCU-AGCCGCUguCGGGUau-----CGGuac -5'
19518 5' -55.5 NC_004685.1 + 53546 0.67 0.710275
Target:  5'- -gGcgCGGCG-CGGCcgacuccaggggaCCGUGGCCGUGc -3'
miRNA:   3'- agCuaGCCGCuGUCG-------------GGUAUCGGUAC- -5'
19518 5' -55.5 NC_004685.1 + 21232 0.67 0.69751
Target:  5'- cUGAUCGGCGcggccaucgugcugGCAggcguGCCCAaGGCCAa- -3'
miRNA:   3'- aGCUAGCCGC--------------UGU-----CGGGUaUCGGUac -5'
19518 5' -55.5 NC_004685.1 + 57269 0.67 0.679279
Target:  5'- ---cUCGGCGAUGGCCCGcaccUGGUCGa- -3'
miRNA:   3'- agcuAGCCGCUGUCGGGU----AUCGGUac -5'
19518 5' -55.5 NC_004685.1 + 57843 0.67 0.679279
Target:  5'- -aGGUCGGCGGuCGcGCCCAccaacucGGCCAUc -3'
miRNA:   3'- agCUAGCCGCU-GU-CGGGUa------UCGGUAc -5'
19518 5' -55.5 NC_004685.1 + 9897 0.67 0.679279
Target:  5'- cUCGggCGGCGGCAcCCCGcAGCgGUu -3'
miRNA:   3'- -AGCuaGCCGCUGUcGGGUaUCGgUAc -5'
19518 5' -55.5 NC_004685.1 + 66942 0.67 0.667411
Target:  5'- gUUGGUCGcG-GGCAGCCCGUagauguaGGCCAc- -3'
miRNA:   3'- -AGCUAGC-CgCUGUCGGGUA-------UCGGUac -5'
19518 5' -55.5 NC_004685.1 + 13209 0.68 0.657672
Target:  5'- cCGaAUCGGa-GCAGCCCAagGGCCGg- -3'
miRNA:   3'- aGC-UAGCCgcUGUCGGGUa-UCGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.