miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19519 3' -59.5 NC_004685.1 + 47218 0.66 0.528289
Target:  5'- gAGGUCCAGCucGCCGCgACCcGA-CGCGa -3'
miRNA:   3'- -UUCGGGUCG--UGGUGgUGGaCUcGUGC- -5'
19519 3' -59.5 NC_004685.1 + 15710 0.66 0.528289
Target:  5'- cGAGUCCuGgGCCACC-CC-GAGUugGg -3'
miRNA:   3'- -UUCGGGuCgUGGUGGuGGaCUCGugC- -5'
19519 3' -59.5 NC_004685.1 + 36632 0.66 0.527254
Target:  5'- cAAGCUCAucGCcgucaacGCCACCGCCgacggguuUGAGCugGu -3'
miRNA:   3'- -UUCGGGU--CG-------UGGUGGUGG--------ACUCGugC- -5'
19519 3' -59.5 NC_004685.1 + 48323 0.66 0.517982
Target:  5'- cGGGUCCAGCuGCCGuCgGCCUGAaucggcccgucGCACa -3'
miRNA:   3'- -UUCGGGUCG-UGGU-GgUGGACU-----------CGUGc -5'
19519 3' -59.5 NC_004685.1 + 49162 0.66 0.517982
Target:  5'- cAGCuCCuGCGCCACCuCCUccaacGCGCGg -3'
miRNA:   3'- uUCG-GGuCGUGGUGGuGGAcu---CGUGC- -5'
19519 3' -59.5 NC_004685.1 + 69567 0.66 0.517982
Target:  5'- -cGCCC-GCGCCggucgccgcuACCGCCUagcggccaacGGGCGCGc -3'
miRNA:   3'- uuCGGGuCGUGG----------UGGUGGA----------CUCGUGC- -5'
19519 3' -59.5 NC_004685.1 + 30608 0.66 0.517982
Target:  5'- cGGCCgCGuuGCCACCcuuGCC-GAGCACGa -3'
miRNA:   3'- uUCGG-GUcgUGGUGG---UGGaCUCGUGC- -5'
19519 3' -59.5 NC_004685.1 + 41359 0.66 0.517982
Target:  5'- -cGCuCCAGCugCuUgACCaGAGCGCGg -3'
miRNA:   3'- uuCG-GGUCGugGuGgUGGaCUCGUGC- -5'
19519 3' -59.5 NC_004685.1 + 31164 0.66 0.507756
Target:  5'- -cGCUCGcCGCCgcGCCGguCCUGGGCGCGa -3'
miRNA:   3'- uuCGGGUcGUGG--UGGU--GGACUCGUGC- -5'
19519 3' -59.5 NC_004685.1 + 37554 0.66 0.507756
Target:  5'- -cGCCCAGCGgugucggugCGCCACCcggugUGAGCuGCGg -3'
miRNA:   3'- uuCGGGUCGUg--------GUGGUGG-----ACUCG-UGC- -5'
19519 3' -59.5 NC_004685.1 + 43451 0.66 0.497618
Target:  5'- cAAGCCCGGCGCguCCggcgacAUCUG-GCugGa -3'
miRNA:   3'- -UUCGGGUCGUGguGG------UGGACuCGugC- -5'
19519 3' -59.5 NC_004685.1 + 27220 0.66 0.497618
Target:  5'- gAAGUUCGGCACCACCgacGCCgccaaGGGCuguCGu -3'
miRNA:   3'- -UUCGGGUCGUGGUGG---UGGa----CUCGu--GC- -5'
19519 3' -59.5 NC_004685.1 + 32369 0.66 0.497618
Target:  5'- -uGgCCGGCAUCACCGCgCaGGGCAUc -3'
miRNA:   3'- uuCgGGUCGUGGUGGUG-GaCUCGUGc -5'
19519 3' -59.5 NC_004685.1 + 62294 0.66 0.484575
Target:  5'- -cGCCCucGCACCGCUugCcgucgggaccaucgUGGGCACc -3'
miRNA:   3'- uuCGGGu-CGUGGUGGugG--------------ACUCGUGc -5'
19519 3' -59.5 NC_004685.1 + 39481 0.66 0.47762
Target:  5'- uGGCCgCGGCGCC-CagGCCgacGAGCGCGc -3'
miRNA:   3'- uUCGG-GUCGUGGuGg-UGGa--CUCGUGC- -5'
19519 3' -59.5 NC_004685.1 + 6427 0.67 0.467771
Target:  5'- -cGgCCAGCGCCugCGCgacaaCUG-GCGCGa -3'
miRNA:   3'- uuCgGGUCGUGGugGUG-----GACuCGUGC- -5'
19519 3' -59.5 NC_004685.1 + 34243 0.67 0.467771
Target:  5'- -cGaCCCGGCcacguCgACCACCUGAcGCACc -3'
miRNA:   3'- uuC-GGGUCGu----GgUGGUGGACU-CGUGc -5'
19519 3' -59.5 NC_004685.1 + 66773 0.67 0.467771
Target:  5'- uGGCCCGccGCACCGgCACUgGGGC-CGg -3'
miRNA:   3'- uUCGGGU--CGUGGUgGUGGaCUCGuGC- -5'
19519 3' -59.5 NC_004685.1 + 45179 0.67 0.467771
Target:  5'- --aCCCAGuCACCGuCCACCaggaUGuGCGCGa -3'
miRNA:   3'- uucGGGUC-GUGGU-GGUGG----ACuCGUGC- -5'
19519 3' -59.5 NC_004685.1 + 30452 0.67 0.467771
Target:  5'- cAAGCCCgucccccagccGGCGCCgaaGCCGCCgccagGcGGCGCGu -3'
miRNA:   3'- -UUCGGG-----------UCGUGG---UGGUGGa----C-UCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.