miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19519 5' -56.5 NC_004685.1 + 602 0.66 0.748664
Target:  5'- uCG-GUGAgcgCG-GC-GCGCACCCGuAGCc -3'
miRNA:   3'- -GCgCACUa--GCuCGuCGUGUGGGC-UCG- -5'
19519 5' -56.5 NC_004685.1 + 47301 0.66 0.738515
Target:  5'- gCGUGUGGcCGAGgAGCGaGCCacugacuaCGAGCg -3'
miRNA:   3'- -GCGCACUaGCUCgUCGUgUGG--------GCUCG- -5'
19519 5' -56.5 NC_004685.1 + 35508 0.66 0.728265
Target:  5'- uCGCGa---CGGGguGUACAucUCCGAGCa -3'
miRNA:   3'- -GCGCacuaGCUCguCGUGU--GGGCUCG- -5'
19519 5' -56.5 NC_004685.1 + 13690 0.66 0.728265
Target:  5'- cCGCG-GGU---GCGGCGCACCugcaaCGAGCg -3'
miRNA:   3'- -GCGCaCUAgcuCGUCGUGUGG-----GCUCG- -5'
19519 5' -56.5 NC_004685.1 + 21616 0.66 0.717924
Target:  5'- cCGCGaucGAgugcuUCGAGCAGCgggucgGCACCCugcagguggucGAGCc -3'
miRNA:   3'- -GCGCa--CU-----AGCUCGUCG------UGUGGG-----------CUCG- -5'
19519 5' -56.5 NC_004685.1 + 27681 0.66 0.717924
Target:  5'- aGCGUcGAUCGgggcgaAGCGGC-CGCC-GGGCc -3'
miRNA:   3'- gCGCA-CUAGC------UCGUCGuGUGGgCUCG- -5'
19519 5' -56.5 NC_004685.1 + 9120 0.66 0.717924
Target:  5'- uGCGcg--CGAGCuGuCGCAgCCGGGCa -3'
miRNA:   3'- gCGCacuaGCUCGuC-GUGUgGGCUCG- -5'
19519 5' -56.5 NC_004685.1 + 23752 0.66 0.714805
Target:  5'- uCGcCGUG-UCGGGCAGguCcagcuugccgggcaGCgCCGAGCg -3'
miRNA:   3'- -GC-GCACuAGCUCGUCguG--------------UG-GGCUCG- -5'
19519 5' -56.5 NC_004685.1 + 9825 0.66 0.704362
Target:  5'- uGCGccgGGUucuggaucaucagcCGAGacgaGGCGCGCaCCGAGCa -3'
miRNA:   3'- gCGCa--CUA--------------GCUCg---UCGUGUG-GGCUCG- -5'
19519 5' -56.5 NC_004685.1 + 61169 0.66 0.697012
Target:  5'- gGC-UGGUCGAcuGCGGCcCAUCCGguAGCg -3'
miRNA:   3'- gCGcACUAGCU--CGUCGuGUGGGC--UCG- -5'
19519 5' -56.5 NC_004685.1 + 23928 0.66 0.697012
Target:  5'- aGCGUG-UCGAGCAGacucaucgcggcCAC-CCCcAGCc -3'
miRNA:   3'- gCGCACuAGCUCGUC------------GUGuGGGcUCG- -5'
19519 5' -56.5 NC_004685.1 + 33400 0.66 0.697012
Target:  5'- gGCGagaUGAUCGccgcgccGCAGCGCACCgGccuGCu -3'
miRNA:   3'- gCGC---ACUAGCu------CGUCGUGUGGgCu--CG- -5'
19519 5' -56.5 NC_004685.1 + 49626 0.66 0.695959
Target:  5'- aCGCcagGUGGUCGAGgaacgccCGGUuCACCCG-GCg -3'
miRNA:   3'- -GCG---CACUAGCUC-------GUCGuGUGGGCuCG- -5'
19519 5' -56.5 NC_004685.1 + 35549 0.67 0.686461
Target:  5'- -aCGUGGggccgUGGGCAcuGCugaucGCGCCCGAGCc -3'
miRNA:   3'- gcGCACUa----GCUCGU--CG-----UGUGGGCUCG- -5'
19519 5' -56.5 NC_004685.1 + 64901 0.67 0.685403
Target:  5'- gCGCGUGcucgaagugCGGGCacaguauccggccAGCGCGCCgaccaCGAGCg -3'
miRNA:   3'- -GCGCACua-------GCUCG-------------UCGUGUGG-----GCUCG- -5'
19519 5' -56.5 NC_004685.1 + 55518 0.67 0.685403
Target:  5'- gGCG---UCGAGCAGCAucugaaugcccuuCACCCGgucgGGCu -3'
miRNA:   3'- gCGCacuAGCUCGUCGU-------------GUGGGC----UCG- -5'
19519 5' -56.5 NC_004685.1 + 67058 0.67 0.675862
Target:  5'- aCGagGUG--UGGGCAGCcgucGCugCCGAGCa -3'
miRNA:   3'- -GCg-CACuaGCUCGUCG----UGugGGCUCG- -5'
19519 5' -56.5 NC_004685.1 + 6269 0.67 0.675862
Target:  5'- gGCGUGcAUCGAGguGCGCGa-CaAGCu -3'
miRNA:   3'- gCGCAC-UAGCUCguCGUGUggGcUCG- -5'
19519 5' -56.5 NC_004685.1 + 37933 0.67 0.675862
Target:  5'- gCGgGUGGUCgGAGCuggccGGCACcuacacgguGCCCGAagGCg -3'
miRNA:   3'- -GCgCACUAG-CUCG-----UCGUG---------UGGGCU--CG- -5'
19519 5' -56.5 NC_004685.1 + 14958 0.67 0.675862
Target:  5'- gGCGUGAguUCGuGCGuCGCugCUGaAGCg -3'
miRNA:   3'- gCGCACU--AGCuCGUcGUGugGGC-UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.