miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19520 5' -53 NC_004685.1 + 24362 0.66 0.881632
Target:  5'- aCCgcgGCGgguuggCGGCAauCCugaUCCGCGACAAccGCg -3'
miRNA:   3'- -GGa--CGCa-----GUCGU--GG---AGGCGUUGUU--UG- -5'
19520 5' -53 NC_004685.1 + 28461 0.66 0.881632
Target:  5'- gCCagGCGUacaucacagagCAGCGgguUCUCCGCGACAccaGGCa -3'
miRNA:   3'- -GGa-CGCA-----------GUCGU---GGAGGCGUUGU---UUG- -5'
19520 5' -53 NC_004685.1 + 21601 0.66 0.873923
Target:  5'- gCUGgGUCGGCACgUUCGguGCc--- -3'
miRNA:   3'- gGACgCAGUCGUGgAGGCguUGuuug -5'
19520 5' -53 NC_004685.1 + 37271 0.66 0.873923
Target:  5'- uCCUGCGcCAGCuuCgagCCGcCAGCcggGAGCa -3'
miRNA:   3'- -GGACGCaGUCGugGa--GGC-GUUG---UUUG- -5'
19520 5' -53 NC_004685.1 + 20670 0.66 0.873923
Target:  5'- --cGCGg-AGUGCCgcggCCGCAugGAGCa -3'
miRNA:   3'- ggaCGCagUCGUGGa---GGCGUugUUUG- -5'
19520 5' -53 NC_004685.1 + 29191 0.66 0.865962
Target:  5'- gCCaGCGggccgagCAGCGCCugaaUCUGCGGCAGc- -3'
miRNA:   3'- -GGaCGCa------GUCGUGG----AGGCGUUGUUug -5'
19520 5' -53 NC_004685.1 + 47230 0.66 0.855248
Target:  5'- aCUGCGUUggagcaggugcagaAGCagugcgacGCCUgCCGCAAgGAGCu -3'
miRNA:   3'- gGACGCAG--------------UCG--------UGGA-GGCGUUgUUUG- -5'
19520 5' -53 NC_004685.1 + 66809 0.66 0.849313
Target:  5'- uCCUG-GcCAGCGCCgugcgcaccggCCGCAAgccCAAGCa -3'
miRNA:   3'- -GGACgCaGUCGUGGa----------GGCGUU---GUUUG- -5'
19520 5' -53 NC_004685.1 + 13813 0.66 0.848456
Target:  5'- uUCgGCGUCAGCAUCcCCcgccaguGCGGCAAGa -3'
miRNA:   3'- -GGaCGCAGUCGUGGaGG-------CGUUGUUUg -5'
19520 5' -53 NC_004685.1 + 48929 0.67 0.840641
Target:  5'- uCCU-CGUCGGCuuccGCCUCUaGCGGCAGc- -3'
miRNA:   3'- -GGAcGCAGUCG----UGGAGG-CGUUGUUug -5'
19520 5' -53 NC_004685.1 + 55648 0.67 0.840641
Target:  5'- aCCUcUGUCAGCucaGCCUCCcGCGcuGCGAGg -3'
miRNA:   3'- -GGAcGCAGUCG---UGGAGG-CGU--UGUUUg -5'
19520 5' -53 NC_004685.1 + 44424 0.67 0.831748
Target:  5'- cCCUGUGgaccuugggCGGCACCgCCGCAGu---- -3'
miRNA:   3'- -GGACGCa--------GUCGUGGaGGCGUUguuug -5'
19520 5' -53 NC_004685.1 + 20355 0.67 0.831748
Target:  5'- gCUGcCGUCggAGCugCUggCCGCGGcCGAGCa -3'
miRNA:   3'- gGAC-GCAG--UCGugGA--GGCGUU-GUUUG- -5'
19520 5' -53 NC_004685.1 + 2573 0.67 0.831748
Target:  5'- aCUGCG-CcGCGCCgagcgUCGCAACGAc- -3'
miRNA:   3'- gGACGCaGuCGUGGa----GGCGUUGUUug -5'
19520 5' -53 NC_004685.1 + 58098 0.67 0.831748
Target:  5'- gCCUGCG-CGGC-UCgCCGCGACcuGCc -3'
miRNA:   3'- -GGACGCaGUCGuGGaGGCGUUGuuUG- -5'
19520 5' -53 NC_004685.1 + 57234 0.67 0.830847
Target:  5'- aCUG-GUCAGCugaccggGCgCUCgGCGGCGGGCg -3'
miRNA:   3'- gGACgCAGUCG-------UG-GAGgCGUUGUUUG- -5'
19520 5' -53 NC_004685.1 + 49016 0.67 0.822644
Target:  5'- uCCaUGCGgccgCGGCA-CUCCGCGACc--- -3'
miRNA:   3'- -GG-ACGCa---GUCGUgGAGGCGUUGuuug -5'
19520 5' -53 NC_004685.1 + 57925 0.67 0.822644
Target:  5'- gCUGCGUgCAGCuCCU-CGCGGCGc-- -3'
miRNA:   3'- gGACGCA-GUCGuGGAgGCGUUGUuug -5'
19520 5' -53 NC_004685.1 + 35976 0.67 0.822644
Target:  5'- cCUUGCG-CAGUACCgucuugucgCCGuCGACGAAg -3'
miRNA:   3'- -GGACGCaGUCGUGGa--------GGC-GUUGUUUg -5'
19520 5' -53 NC_004685.1 + 9138 0.67 0.813338
Target:  5'- aCUGCaUCAaCGCCUgCUGCAGCGGAg -3'
miRNA:   3'- gGACGcAGUcGUGGA-GGCGUUGUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.