miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19521 3' -55.4 NC_004685.1 + 20500 0.66 0.800645
Target:  5'- aUCACCGCCGAa--GcCaGCC-GCGCg -3'
miRNA:   3'- cAGUGGUGGCUgagCaGaUGGaCGCG- -5'
19521 3' -55.4 NC_004685.1 + 62201 0.66 0.800645
Target:  5'- gGUgACCuucuUCGACUUcaccUCUACCUGgGCa -3'
miRNA:   3'- -CAgUGGu---GGCUGAGc---AGAUGGACgCG- -5'
19521 3' -55.4 NC_004685.1 + 36847 0.66 0.800645
Target:  5'- gGUCAUguUCGGCU--UCUugUUGCGCa -3'
miRNA:   3'- -CAGUGguGGCUGAgcAGAugGACGCG- -5'
19521 3' -55.4 NC_004685.1 + 62915 0.66 0.799702
Target:  5'- cGUCACgcagacgCACCGGCUCG-----CUGCGCa -3'
miRNA:   3'- -CAGUG-------GUGGCUGAGCagaugGACGCG- -5'
19521 3' -55.4 NC_004685.1 + 60783 0.66 0.791145
Target:  5'- -cCGCCGCCGACUCcagcGCCgcaaUGUGCc -3'
miRNA:   3'- caGUGGUGGCUGAGcagaUGG----ACGCG- -5'
19521 3' -55.4 NC_004685.1 + 37300 0.66 0.791145
Target:  5'- --gAgCACCGugUCGaugaUGCCcUGCGCg -3'
miRNA:   3'- cagUgGUGGCugAGCag--AUGG-ACGCG- -5'
19521 3' -55.4 NC_004685.1 + 60385 0.66 0.790186
Target:  5'- cUCGCCGCCGcuguuagGCUCGgguggcCCUGCaGCu -3'
miRNA:   3'- cAGUGGUGGC-------UGAGCagau--GGACG-CG- -5'
19521 3' -55.4 NC_004685.1 + 61158 0.66 0.77168
Target:  5'- aUCAUCgaGCCGGCUgGUCga-CUGCGg -3'
miRNA:   3'- cAGUGG--UGGCUGAgCAGaugGACGCg -5'
19521 3' -55.4 NC_004685.1 + 16831 0.66 0.77168
Target:  5'- --gGCCAUCGACgacgUGUCcgACCUGCu- -3'
miRNA:   3'- cagUGGUGGCUGa---GCAGa-UGGACGcg -5'
19521 3' -55.4 NC_004685.1 + 8688 0.66 0.761735
Target:  5'- -gCAUCGCCGGCaCG---GCCUGCGUg -3'
miRNA:   3'- caGUGGUGGCUGaGCagaUGGACGCG- -5'
19521 3' -55.4 NC_004685.1 + 16103 0.66 0.761735
Target:  5'- cUCACCAUCGGcCUgGUCa--CUGUGCc -3'
miRNA:   3'- cAGUGGUGGCU-GAgCAGaugGACGCG- -5'
19521 3' -55.4 NC_004685.1 + 8529 0.66 0.751663
Target:  5'- aGUCgACCAgCCGGCUCGaugauccggugUCgggUCUGCGCc -3'
miRNA:   3'- -CAG-UGGU-GGCUGAGC-----------AGau-GGACGCG- -5'
19521 3' -55.4 NC_004685.1 + 7709 0.66 0.751663
Target:  5'- -cCGCaCAgCGAaggCGUgUGCCUGUGCg -3'
miRNA:   3'- caGUG-GUgGCUga-GCAgAUGGACGCG- -5'
19521 3' -55.4 NC_004685.1 + 34269 0.67 0.741474
Target:  5'- -nCACCGCCGAgUCGaUC-ACC-GUGCc -3'
miRNA:   3'- caGUGGUGGCUgAGC-AGaUGGaCGCG- -5'
19521 3' -55.4 NC_004685.1 + 69481 0.67 0.741474
Target:  5'- -aCACCAgCGcgcACUCGUCgcgccgaaACCcGCGCg -3'
miRNA:   3'- caGUGGUgGC---UGAGCAGa-------UGGaCGCG- -5'
19521 3' -55.4 NC_004685.1 + 2748 0.67 0.741474
Target:  5'- aUgGCCAgCGuCUCGUCgggcacggUGCCgcgGCGCg -3'
miRNA:   3'- cAgUGGUgGCuGAGCAG--------AUGGa--CGCG- -5'
19521 3' -55.4 NC_004685.1 + 26531 0.67 0.741474
Target:  5'- cUCGCCGCCGcACUCGg-----UGCGCg -3'
miRNA:   3'- cAGUGGUGGC-UGAGCagauggACGCG- -5'
19521 3' -55.4 NC_004685.1 + 54064 0.67 0.741474
Target:  5'- cUCGCCGuCgCGACUCGgagcguugCUGCaucuUGCGCu -3'
miRNA:   3'- cAGUGGU-G-GCUGAGCa-------GAUGg---ACGCG- -5'
19521 3' -55.4 NC_004685.1 + 65697 0.67 0.73118
Target:  5'- -aCACCggGCCGGCugUCGUCgUGCCcGCGg -3'
miRNA:   3'- caGUGG--UGGCUG--AGCAG-AUGGaCGCg -5'
19521 3' -55.4 NC_004685.1 + 36819 0.67 0.73118
Target:  5'- -aCACCAUCGugUCGUCguaugACCgGUa- -3'
miRNA:   3'- caGUGGUGGCugAGCAGa----UGGaCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.