miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19521 5' -54.3 NC_004685.1 + 29083 0.66 0.814893
Target:  5'- -gGCGCg---GCGGCGUuCGGCACc-- -3'
miRNA:   3'- caUGCGucuaCGCCGUA-GCCGUGuac -5'
19521 5' -54.3 NC_004685.1 + 1966 0.66 0.805433
Target:  5'- cGUugGCGucGGUGgGGCGcucccgcgUCGGCGC-UGg -3'
miRNA:   3'- -CAugCGU--CUACgCCGU--------AGCCGUGuAC- -5'
19521 5' -54.3 NC_004685.1 + 17814 0.66 0.805433
Target:  5'- -cGCGCuGAUG-GcGCAUCaGCAUAUGg -3'
miRNA:   3'- caUGCGuCUACgC-CGUAGcCGUGUAC- -5'
19521 5' -54.3 NC_004685.1 + 40347 0.66 0.795792
Target:  5'- aGUACgggGCGGGgcGCGGCAUCcGGCAgAUc -3'
miRNA:   3'- -CAUG---CGUCUa-CGCCGUAG-CCGUgUAc -5'
19521 5' -54.3 NC_004685.1 + 25630 0.66 0.795792
Target:  5'- --cCGCAGGUcGCGGUugGUUGGCGugguCAUGg -3'
miRNA:   3'- cauGCGUCUA-CGCCG--UAGCCGU----GUAC- -5'
19521 5' -54.3 NC_004685.1 + 14817 0.66 0.795792
Target:  5'- aGUugGCGGcgGCGGCu---GCGCAg- -3'
miRNA:   3'- -CAugCGUCuaCGCCGuagcCGUGUac -5'
19521 5' -54.3 NC_004685.1 + 24925 0.66 0.795792
Target:  5'- -cGCGCGG-UGuCGGCGUCGGguCc-- -3'
miRNA:   3'- caUGCGUCuAC-GCCGUAGCCguGuac -5'
19521 5' -54.3 NC_004685.1 + 57034 0.66 0.785978
Target:  5'- -gACaGCGGccGCGuGCcgCGGCGCAUa -3'
miRNA:   3'- caUG-CGUCuaCGC-CGuaGCCGUGUAc -5'
19521 5' -54.3 NC_004685.1 + 6561 0.66 0.776003
Target:  5'- --cUGgAGGUGCuGGCAgcUCGGCACcgGc -3'
miRNA:   3'- cauGCgUCUACG-CCGU--AGCCGUGuaC- -5'
19521 5' -54.3 NC_004685.1 + 35932 0.66 0.776003
Target:  5'- -cGCGCGGcUG-GGUGUCGGCGauCGUGa -3'
miRNA:   3'- caUGCGUCuACgCCGUAGCCGU--GUAC- -5'
19521 5' -54.3 NC_004685.1 + 32195 0.66 0.771972
Target:  5'- cGUACGCGGGcuacgGCGGCGgcuucaaggugggCGGCgGCAUu -3'
miRNA:   3'- -CAUGCGUCUa----CGCCGUa------------GCCG-UGUAc -5'
19521 5' -54.3 NC_004685.1 + 55325 0.67 0.755618
Target:  5'- -cACGgGGGUGCGGUGcgGGCACGa- -3'
miRNA:   3'- caUGCgUCUACGCCGUagCCGUGUac -5'
19521 5' -54.3 NC_004685.1 + 63723 0.67 0.745229
Target:  5'- -cGCGCGGAU-CGuaGUCGGCGCu-- -3'
miRNA:   3'- caUGCGUCUAcGCcgUAGCCGUGuac -5'
19521 5' -54.3 NC_004685.1 + 20109 0.67 0.745229
Target:  5'- -cGCGCGGGUGCuGGCGaugcgCGGCGa--- -3'
miRNA:   3'- caUGCGUCUACG-CCGUa----GCCGUguac -5'
19521 5' -54.3 NC_004685.1 + 11777 0.67 0.734725
Target:  5'- -cACGCAGccaucGCcgaGGCG-CGGCGCAUGg -3'
miRNA:   3'- caUGCGUCua---CG---CCGUaGCCGUGUAC- -5'
19521 5' -54.3 NC_004685.1 + 26592 0.67 0.734725
Target:  5'- cUGCGCGccgGCGGCAagUCGGCggccgACGUGu -3'
miRNA:   3'- cAUGCGUcuaCGCCGU--AGCCG-----UGUAC- -5'
19521 5' -54.3 NC_004685.1 + 5685 0.67 0.733669
Target:  5'- -gGCGguGGUGCGaaugaucggcgacGgGUCGGCGCAg- -3'
miRNA:   3'- caUGCguCUACGC-------------CgUAGCCGUGUac -5'
19521 5' -54.3 NC_004685.1 + 53436 0.67 0.724118
Target:  5'- cUugGC-GAUGuCGGCGgUCGGCACu-- -3'
miRNA:   3'- cAugCGuCUAC-GCCGU-AGCCGUGuac -5'
19521 5' -54.3 NC_004685.1 + 55724 0.67 0.713419
Target:  5'- -cGCGCAcc-GCGGUgAUCGGCACgAUGa -3'
miRNA:   3'- caUGCGUcuaCGCCG-UAGCCGUG-UAC- -5'
19521 5' -54.3 NC_004685.1 + 19118 0.67 0.713419
Target:  5'- -cGCGCuGGAgGCGGCGcCGGCGCc-- -3'
miRNA:   3'- caUGCG-UCUaCGCCGUaGCCGUGuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.