miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19522 3' -52.6 NC_004685.1 + 12068 0.66 0.898843
Target:  5'- cGUGCaaGAAGaucGUcGCGGCCGGUGa -3'
miRNA:   3'- -CACGagCUUUau-CAaCGCCGGUCGCc -5'
19522 3' -52.6 NC_004685.1 + 40476 0.66 0.896738
Target:  5'- gGUGCUgGAAcaucagcgcggccuGUUgcGCGGCCGGCGa -3'
miRNA:   3'- -CACGAgCUUuau-----------CAA--CGCCGGUCGCc -5'
19522 3' -52.6 NC_004685.1 + 58067 0.66 0.884355
Target:  5'- uGUGCccgCGAcaaacgAGUGGcauggUGCGGCCugcGCGGc -3'
miRNA:   3'- -CACGa--GCU------UUAUCa----ACGCCGGu--CGCC- -5'
19522 3' -52.6 NC_004685.1 + 52947 0.66 0.884355
Target:  5'- cUGCUCGGu---GUaGCGGUCGGUGu -3'
miRNA:   3'- cACGAGCUuuauCAaCGCCGGUCGCc -5'
19522 3' -52.6 NC_004685.1 + 63680 0.66 0.876716
Target:  5'- aGUGCgagGGucUGGUUGCGGCgGGCc- -3'
miRNA:   3'- -CACGag-CUuuAUCAACGCCGgUCGcc -5'
19522 3' -52.6 NC_004685.1 + 2450 0.66 0.876716
Target:  5'- cGUGCUCGAAG----UGCGGgCaCAGCa- -3'
miRNA:   3'- -CACGAGCUUUaucaACGCC-G-GUCGcc -5'
19522 3' -52.6 NC_004685.1 + 29622 0.66 0.868821
Target:  5'- gGUGUcaUCGAAcgAGaUGUGGCCcGCGu -3'
miRNA:   3'- -CACG--AGCUUuaUCaACGCCGGuCGCc -5'
19522 3' -52.6 NC_004685.1 + 37619 0.66 0.868018
Target:  5'- -cGCUCGGcgcguuccccagcGAUucGGUcGCGGgCGGCGGc -3'
miRNA:   3'- caCGAGCU-------------UUA--UCAaCGCCgGUCGCC- -5'
19522 3' -52.6 NC_004685.1 + 7152 0.67 0.852292
Target:  5'- cGUGUUCGGc---GggGUGGCCAucGCGGu -3'
miRNA:   3'- -CACGAGCUuuauCaaCGCCGGU--CGCC- -5'
19522 3' -52.6 NC_004685.1 + 57658 0.67 0.843674
Target:  5'- -gGCUgCGGGugacAGUgagcaCGGCCAGCGGg -3'
miRNA:   3'- caCGA-GCUUua--UCAac---GCCGGUCGCC- -5'
19522 3' -52.6 NC_004685.1 + 5492 0.67 0.843674
Target:  5'- -gGC-CGAcAUGGUgGCGGCCaucgccgccgAGCGGc -3'
miRNA:   3'- caCGaGCUuUAUCAaCGCCGG----------UCGCC- -5'
19522 3' -52.6 NC_004685.1 + 2861 0.67 0.825771
Target:  5'- cUGCUUGGGc---UUGCGGCCGGUGc -3'
miRNA:   3'- cACGAGCUUuaucAACGCCGGUCGCc -5'
19522 3' -52.6 NC_004685.1 + 759 0.67 0.825771
Target:  5'- cUGCUCGGucuug--GCGGCagCAGCGGc -3'
miRNA:   3'- cACGAGCUuuaucaaCGCCG--GUCGCC- -5'
19522 3' -52.6 NC_004685.1 + 59482 0.67 0.825771
Target:  5'- -aGCUCGGgc-GGcgGCGgguuGCCAGCGGa -3'
miRNA:   3'- caCGAGCUuuaUCaaCGC----CGGUCGCC- -5'
19522 3' -52.6 NC_004685.1 + 16549 0.68 0.804169
Target:  5'- cGUGCUCGAcGUGGagccgagcgacgacgGCGGCguGCuGGu -3'
miRNA:   3'- -CACGAGCUuUAUCaa-------------CGCCGguCG-CC- -5'
19522 3' -52.6 NC_004685.1 + 40947 0.69 0.767452
Target:  5'- gGUGCugUCGccGUGGauucUGCGGCCGcGCGGc -3'
miRNA:   3'- -CACG--AGCuuUAUCa---ACGCCGGU-CGCC- -5'
19522 3' -52.6 NC_004685.1 + 49305 0.69 0.745718
Target:  5'- cGUGCucaUCGAGGUacugcucGGccGCGGCCAGCa- -3'
miRNA:   3'- -CACG---AGCUUUA-------UCaaCGCCGGUCGcc -5'
19522 3' -52.6 NC_004685.1 + 52351 0.7 0.659136
Target:  5'- -cGCUUGAAGUAGUcGCcaccucgcaccuuGGCCAGCu- -3'
miRNA:   3'- caCGAGCUUUAUCAaCG-------------CCGGUCGcc -5'
19522 3' -52.6 NC_004685.1 + 39073 0.72 0.550187
Target:  5'- cGUGCUCGGcaagGGUGGcaacGCGGCCGaCGGg -3'
miRNA:   3'- -CACGAGCU----UUAUCaa--CGCCGGUcGCC- -5'
19522 3' -52.6 NC_004685.1 + 18346 0.76 0.380555
Target:  5'- cUGCUCGA------UGCGGCCGGUGGc -3'
miRNA:   3'- cACGAGCUuuaucaACGCCGGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.