miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19522 5' -61.1 NC_004685.1 + 34138 0.66 0.496303
Target:  5'- cAGCaguGC-CCACgGCC-CCACGUaGUCg -3'
miRNA:   3'- -UCGg--CGaGGUGgCGGuGGUGCAgCAG- -5'
19522 5' -61.1 NC_004685.1 + 3509 0.66 0.496303
Target:  5'- uGCUGUUCUGCgGCCAUCACGcCa-- -3'
miRNA:   3'- uCGGCGAGGUGgCGGUGGUGCaGcag -5'
19522 5' -61.1 NC_004685.1 + 66781 0.66 0.496303
Target:  5'- gGGCCgGCauggccaCACCGUCACCAgGUcaccCGUCg -3'
miRNA:   3'- -UCGG-CGag-----GUGGCGGUGGUgCA----GCAG- -5'
19522 5' -61.1 NC_004685.1 + 53749 0.66 0.496303
Target:  5'- uGGCgGCgUCCacuucucggaacGCCGCCACCAgccgGUCGaUCg -3'
miRNA:   3'- -UCGgCG-AGG------------UGGCGGUGGUg---CAGC-AG- -5'
19522 5' -61.1 NC_004685.1 + 29968 0.66 0.486556
Target:  5'- uGGCCGCgCUgaaGCUgGCCGCCGCgGUCGa- -3'
miRNA:   3'- -UCGGCGaGG---UGG-CGGUGGUG-CAGCag -5'
19522 5' -61.1 NC_004685.1 + 32809 0.66 0.486556
Target:  5'- cGGCCGCggCCgacgauguuGCCGgaCGCCGCGgUGUCg -3'
miRNA:   3'- -UCGGCGa-GG---------UGGCg-GUGGUGCaGCAG- -5'
19522 5' -61.1 NC_004685.1 + 45629 0.66 0.486556
Target:  5'- uGCUGCaucUUCGCCGuCCACCuuGUCG-Ca -3'
miRNA:   3'- uCGGCG---AGGUGGC-GGUGGugCAGCaG- -5'
19522 5' -61.1 NC_004685.1 + 56123 0.66 0.486556
Target:  5'- aAGUCGaggaCCggACUGUCGCCGuCGUCGUCa -3'
miRNA:   3'- -UCGGCga--GG--UGGCGGUGGU-GCAGCAG- -5'
19522 5' -61.1 NC_004685.1 + 38231 0.66 0.4769
Target:  5'- uGCCGCUgCUGCCGUaACCGCcggUGUCg -3'
miRNA:   3'- uCGGCGA-GGUGGCGgUGGUGca-GCAG- -5'
19522 5' -61.1 NC_004685.1 + 55265 0.66 0.4769
Target:  5'- gAG-CGCUUCGCgGCggaACC-CGUCGUCa -3'
miRNA:   3'- -UCgGCGAGGUGgCGg--UGGuGCAGCAG- -5'
19522 5' -61.1 NC_004685.1 + 32033 0.66 0.4769
Target:  5'- gAGUCGaacguccaUCCGCCGCCGCC-CG-CGa- -3'
miRNA:   3'- -UCGGCg-------AGGUGGCGGUGGuGCaGCag -5'
19522 5' -61.1 NC_004685.1 + 15958 0.66 0.4769
Target:  5'- uGCCaauggcgacgGCUCCgACgGCUACCccauccgguuccGCGUCGUCc -3'
miRNA:   3'- uCGG----------CGAGG-UGgCGGUGG------------UGCAGCAG- -5'
19522 5' -61.1 NC_004685.1 + 35920 0.66 0.47594
Target:  5'- cGCCGa--CACCGCgacgacgCACCACGUC-UCg -3'
miRNA:   3'- uCGGCgagGUGGCG-------GUGGUGCAGcAG- -5'
19522 5' -61.1 NC_004685.1 + 34405 0.66 0.471153
Target:  5'- cAGCCacagguccacGCU-CACCGUCACCccguaggcgcgggugAUGUCGUCg -3'
miRNA:   3'- -UCGG----------CGAgGUGGCGGUGG---------------UGCAGCAG- -5'
19522 5' -61.1 NC_004685.1 + 9781 0.66 0.467341
Target:  5'- gAGCgGCUgggguucgccuaCCGCgGCCGCCGCGgCGa- -3'
miRNA:   3'- -UCGgCGA------------GGUGgCGGUGGUGCaGCag -5'
19522 5' -61.1 NC_004685.1 + 57806 0.66 0.467341
Target:  5'- aAGgCGCgg-GCCGUguUCACGUCGUCg -3'
miRNA:   3'- -UCgGCGaggUGGCGguGGUGCAGCAG- -5'
19522 5' -61.1 NC_004685.1 + 31156 0.66 0.448524
Target:  5'- cGUCGCgaCGCuCGCCGCCGCGcCGg- -3'
miRNA:   3'- uCGGCGagGUG-GCGGUGGUGCaGCag -5'
19522 5' -61.1 NC_004685.1 + 50570 0.66 0.448524
Target:  5'- cGCCgGCgCCGCCuCCAgCGCGgCGUCg -3'
miRNA:   3'- uCGG-CGaGGUGGcGGUgGUGCaGCAG- -5'
19522 5' -61.1 NC_004685.1 + 22964 0.66 0.448524
Target:  5'- cAGCCa---CGCCGUCucgACCGCGUUGUCg -3'
miRNA:   3'- -UCGGcgagGUGGCGG---UGGUGCAGCAG- -5'
19522 5' -61.1 NC_004685.1 + 30706 0.66 0.448524
Target:  5'- gGGUCGCgguacgcgCCGCCGUCGCCgAUGUCc-- -3'
miRNA:   3'- -UCGGCGa-------GGUGGCGGUGG-UGCAGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.