miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19523 3' -57.7 NC_004685.1 + 67119 0.66 0.687468
Target:  5'- cGCUCGGCg-CGGCGCagugcaGCCUggagGGCa -3'
miRNA:   3'- cUGAGCUGagGCUGUGg-----CGGAa---CCGc -5'
19523 3' -57.7 NC_004685.1 + 5699 0.66 0.676962
Target:  5'- uGAUcggCGACgggUCGGCGCagaGCCUgUGGCGg -3'
miRNA:   3'- -CUGa--GCUGa--GGCUGUGg--CGGA-ACCGC- -5'
19523 3' -57.7 NC_004685.1 + 27885 0.66 0.676962
Target:  5'- cGGCUCGACggaaaCCGG-GCCGaCCUcgaUGGUGg -3'
miRNA:   3'- -CUGAGCUGa----GGCUgUGGC-GGA---ACCGC- -5'
19523 3' -57.7 NC_004685.1 + 22094 0.66 0.676962
Target:  5'- uGCUCGACgCCG-CGCUGCUgacGGCc -3'
miRNA:   3'- cUGAGCUGaGGCuGUGGCGGaa-CCGc -5'
19523 3' -57.7 NC_004685.1 + 38825 0.66 0.666416
Target:  5'- uGCgCGACUCCucGGCGCgaaCCUUGGCGu -3'
miRNA:   3'- cUGaGCUGAGG--CUGUGgc-GGAACCGC- -5'
19523 3' -57.7 NC_004685.1 + 43088 0.66 0.666416
Target:  5'- --gUCGGCcgCCGACuuGCCGCC--GGCGc -3'
miRNA:   3'- cugAGCUGa-GGCUG--UGGCGGaaCCGC- -5'
19523 3' -57.7 NC_004685.1 + 21008 0.66 0.664303
Target:  5'- gGugUCGACUCuCGGCACCuuGCCgcugaacaacGCGa -3'
miRNA:   3'- -CugAGCUGAG-GCUGUGG--CGGaac-------CGC- -5'
19523 3' -57.7 NC_004685.1 + 54994 0.66 0.65584
Target:  5'- aGCUUGcccucCUCgGGCACCGCCUcGGgGu -3'
miRNA:   3'- cUGAGCu----GAGgCUGUGGCGGAaCCgC- -5'
19523 3' -57.7 NC_004685.1 + 32120 0.66 0.65584
Target:  5'- aGCUCacaccggguGGCgcaCCGACACCGCUg-GGCGu -3'
miRNA:   3'- cUGAG---------CUGa--GGCUGUGGCGGaaCCGC- -5'
19523 3' -57.7 NC_004685.1 + 30779 0.66 0.65584
Target:  5'- uGACUcCGGCUUCGGCAa-GCCg-GGCGc -3'
miRNA:   3'- -CUGA-GCUGAGGCUGUggCGGaaCCGC- -5'
19523 3' -57.7 NC_004685.1 + 62931 0.66 0.645244
Target:  5'- cGGCUCG-CUgCG-CACCGCa--GGCGg -3'
miRNA:   3'- -CUGAGCuGAgGCuGUGGCGgaaCCGC- -5'
19523 3' -57.7 NC_004685.1 + 14462 0.66 0.645244
Target:  5'- cGAgUCGuccaGCUUCGACcugGCCGCCUgguccgaccugGGCGa -3'
miRNA:   3'- -CUgAGC----UGAGGCUG---UGGCGGAa----------CCGC- -5'
19523 3' -57.7 NC_004685.1 + 52623 0.66 0.645244
Target:  5'- cGCUCcaGCUCUGACAUgGCCUcaGGCa -3'
miRNA:   3'- cUGAGc-UGAGGCUGUGgCGGAa-CCGc -5'
19523 3' -57.7 NC_004685.1 + 30466 0.66 0.634637
Target:  5'- aGC-CGGCgCCGAaGCCGCCgccaGGCGg -3'
miRNA:   3'- cUGaGCUGaGGCUgUGGCGGaa--CCGC- -5'
19523 3' -57.7 NC_004685.1 + 65221 0.66 0.634637
Target:  5'- cGCUCGuCUCauCGACGCacuCGCCggGGCGc -3'
miRNA:   3'- cUGAGCuGAG--GCUGUG---GCGGaaCCGC- -5'
19523 3' -57.7 NC_004685.1 + 49909 0.66 0.634637
Target:  5'- cGAUUCuGGCUCuCGAUGCCGUUgaaGGCGc -3'
miRNA:   3'- -CUGAG-CUGAG-GCUGUGGCGGaa-CCGC- -5'
19523 3' -57.7 NC_004685.1 + 58302 0.66 0.634637
Target:  5'- cGCUCGAUUC--GCGCCaGCCUccGGCGa -3'
miRNA:   3'- cUGAGCUGAGgcUGUGG-CGGAa-CCGC- -5'
19523 3' -57.7 NC_004685.1 + 51153 0.66 0.633576
Target:  5'- gGGCUCGACUUCGcgguugcggacgcGCACCGaauCCUcggGGCu -3'
miRNA:   3'- -CUGAGCUGAGGC-------------UGUGGC---GGAa--CCGc -5'
19523 3' -57.7 NC_004685.1 + 16935 0.67 0.624027
Target:  5'- cGGCuUCGACUCCuucgaGGguCUGCCUgaggcUGGCGg -3'
miRNA:   3'- -CUG-AGCUGAGG-----CUguGGCGGA-----ACCGC- -5'
19523 3' -57.7 NC_004685.1 + 40573 0.67 0.624027
Target:  5'- gGugUCGACcaccugggCCGGCGCgGCCgguucccucGGCGg -3'
miRNA:   3'- -CugAGCUGa-------GGCUGUGgCGGaa-------CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.