miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19523 5' -58.1 NC_004685.1 + 9771 0.66 0.61011
Target:  5'- gUUCUCCGgugaGCGGCugggguucgccuACCG-CGGCCGCc- -3'
miRNA:   3'- -AAGAGGC----UGCUG------------UGGCuGUCGGCGaa -5'
19523 5' -58.1 NC_004685.1 + 18806 0.66 0.61011
Target:  5'- ----gCGGCGACcgcgcgcaaccGCCGACGGCUGCg- -3'
miRNA:   3'- aagagGCUGCUG-----------UGGCUGUCGGCGaa -5'
19523 5' -58.1 NC_004685.1 + 33577 0.66 0.61011
Target:  5'- -aUUCCGGCGugguCACCGugGgacgagGCCGCg- -3'
miRNA:   3'- aaGAGGCUGCu---GUGGCugU------CGGCGaa -5'
19523 5' -58.1 NC_004685.1 + 375 0.66 0.577916
Target:  5'- gUCaCCaGCG-CAUCGACAGCCGCc- -3'
miRNA:   3'- aAGaGGcUGCuGUGGCUGUCGGCGaa -5'
19523 5' -58.1 NC_004685.1 + 26598 0.66 0.577916
Target:  5'- ---gCCGGCGGCAagUCGGCGGCCGaCg- -3'
miRNA:   3'- aagaGGCUGCUGU--GGCUGUCGGC-Gaa -5'
19523 5' -58.1 NC_004685.1 + 33445 0.66 0.577916
Target:  5'- aUCUUCGGCGAaGgCGACugGGCCGCc- -3'
miRNA:   3'- aAGAGGCUGCUgUgGCUG--UCGGCGaa -5'
19523 5' -58.1 NC_004685.1 + 41370 0.66 0.566197
Target:  5'- aUCUUCaAgGACACCGGCAccgcauccaccucGCCGCUc -3'
miRNA:   3'- aAGAGGcUgCUGUGGCUGU-------------CGGCGAa -5'
19523 5' -58.1 NC_004685.1 + 32790 0.67 0.546107
Target:  5'- gUUCUgcCCGACG-UGCCcGCGGCCGCg- -3'
miRNA:   3'- -AAGA--GGCUGCuGUGGcUGUCGGCGaa -5'
19523 5' -58.1 NC_004685.1 + 8655 0.67 0.535624
Target:  5'- --aUCgCGGCGACACUGAguGCgGCa- -3'
miRNA:   3'- aagAG-GCUGCUGUGGCUguCGgCGaa -5'
19523 5' -58.1 NC_004685.1 + 12300 0.67 0.535624
Target:  5'- aUCgggCCGAUGACGCUGcGCAGCUGg-- -3'
miRNA:   3'- aAGa--GGCUGCUGUGGC-UGUCGGCgaa -5'
19523 5' -58.1 NC_004685.1 + 42646 0.67 0.532493
Target:  5'- --aUCUGGCGggcggccaaggcagGCACCGGauCAGCCGCUa -3'
miRNA:   3'- aagAGGCUGC--------------UGUGGCU--GUCGGCGAa -5'
19523 5' -58.1 NC_004685.1 + 52237 0.67 0.514879
Target:  5'- ---aCCGGCGAugacCACCGGCAggGCCGCc- -3'
miRNA:   3'- aagaGGCUGCU----GUGGCUGU--CGGCGaa -5'
19523 5' -58.1 NC_004685.1 + 32209 0.67 0.504629
Target:  5'- gUUCUCCcagucGACGccgccgaagaACGCCGACAGCgCGUUg -3'
miRNA:   3'- -AAGAGG-----CUGC----------UGUGGCUGUCG-GCGAa -5'
19523 5' -58.1 NC_004685.1 + 37143 0.67 0.494467
Target:  5'- -gCUCCGGCGugGCCG--GGCCGaCg- -3'
miRNA:   3'- aaGAGGCUGCugUGGCugUCGGC-Gaa -5'
19523 5' -58.1 NC_004685.1 + 28487 0.68 0.4844
Target:  5'- gUUCUCCG-CGACACCaGGCAGa-GCa- -3'
miRNA:   3'- -AAGAGGCuGCUGUGG-CUGUCggCGaa -5'
19523 5' -58.1 NC_004685.1 + 5128 0.68 0.4844
Target:  5'- -aUUCCGGCG-CG-CGACGGCCGUUUc -3'
miRNA:   3'- aaGAGGCUGCuGUgGCUGUCGGCGAA- -5'
19523 5' -58.1 NC_004685.1 + 67251 0.68 0.4844
Target:  5'- ---gCCGuCGAacaggcCACCGGCGGCCGCg- -3'
miRNA:   3'- aagaGGCuGCU------GUGGCUGUCGGCGaa -5'
19523 5' -58.1 NC_004685.1 + 18014 0.68 0.483399
Target:  5'- -cCUCCG-CgGGCACCGACGaggcgcuGCCGCa- -3'
miRNA:   3'- aaGAGGCuG-CUGUGGCUGU-------CGGCGaa -5'
19523 5' -58.1 NC_004685.1 + 60251 0.68 0.474432
Target:  5'- cUCcCCGuACGGCGCCGGuCGGcCCGCa- -3'
miRNA:   3'- aAGaGGC-UGCUGUGGCU-GUC-GGCGaa -5'
19523 5' -58.1 NC_004685.1 + 36875 0.68 0.464569
Target:  5'- --gUCCGGCaACAUCGuCGGCCGCg- -3'
miRNA:   3'- aagAGGCUGcUGUGGCuGUCGGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.