miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19524 3' -55 NC_004685.1 + 42056 0.65 0.814659
Target:  5'- uGGGAUgGCG-ACAUgGGCcGCCUgUGg -3'
miRNA:   3'- gCCCUAgUGUaUGUGgCCG-UGGAgAC- -5'
19524 3' -55 NC_004685.1 + 25552 0.65 0.814659
Target:  5'- cCGGGGUCcCAUuugcccugcgccGCGCCGGCccacuCCUUg- -3'
miRNA:   3'- -GCCCUAGuGUA------------UGUGGCCGu----GGAGac -5'
19524 3' -55 NC_004685.1 + 36802 0.66 0.802534
Target:  5'- aGGGcuggugcgucAUCACcgGCACCGGCcCCaacgugcaggcugaUCUGa -3'
miRNA:   3'- gCCC----------UAGUGuaUGUGGCCGuGG--------------AGAC- -5'
19524 3' -55 NC_004685.1 + 6470 0.66 0.786239
Target:  5'- uGGGAcgACA-GCAUCGGCgACCUCg- -3'
miRNA:   3'- gCCCUagUGUaUGUGGCCG-UGGAGac -5'
19524 3' -55 NC_004685.1 + 34038 0.66 0.776441
Target:  5'- uGGGAUCGC-UACACCcugcaugggccuGGCACgUUUu -3'
miRNA:   3'- gCCCUAGUGuAUGUGG------------CCGUGgAGAc -5'
19524 3' -55 NC_004685.1 + 41365 0.67 0.735907
Target:  5'- uGGuGAUCuuCAaggACACCGGCACCg--- -3'
miRNA:   3'- gCC-CUAGu-GUa--UGUGGCCGUGGagac -5'
19524 3' -55 NC_004685.1 + 45902 0.67 0.735907
Target:  5'- uCGaGGAUCGC-UGCGCuCGGCGCUgcccggcaagCUGg -3'
miRNA:   3'- -GC-CCUAGUGuAUGUG-GCCGUGGa---------GAC- -5'
19524 3' -55 NC_004685.1 + 37296 0.67 0.724446
Target:  5'- cCGGGAgCACcgugucgaugAUGCccugcgcggugauGCCGGcCACCUCUGc -3'
miRNA:   3'- -GCCCUaGUG----------UAUG-------------UGGCC-GUGGAGAC- -5'
19524 3' -55 NC_004685.1 + 47755 0.67 0.714988
Target:  5'- aGGGGUCGCcucagGC-UCGGCcuuguccucaGCCUCUGg -3'
miRNA:   3'- gCCCUAGUGua---UGuGGCCG----------UGGAGAC- -5'
19524 3' -55 NC_004685.1 + 62845 0.7 0.585731
Target:  5'- cCGGGGUCACGgcgggaGCCGGUGCgC-CUGg -3'
miRNA:   3'- -GCCCUAGUGUaug---UGGCCGUG-GaGAC- -5'
19524 3' -55 NC_004685.1 + 33899 0.7 0.553651
Target:  5'- uGGGGUUcgGCAUggagucggGCACCGGCGCUUUg- -3'
miRNA:   3'- gCCCUAG--UGUA--------UGUGGCCGUGGAGac -5'
19524 3' -55 NC_004685.1 + 36489 0.71 0.481209
Target:  5'- cCGGGuugCGCGUccaccGCACCGGCGCC-Ca- -3'
miRNA:   3'- -GCCCua-GUGUA-----UGUGGCCGUGGaGac -5'
19524 3' -55 NC_004685.1 + 17243 0.72 0.432389
Target:  5'- gCGGGAguUCGCcgaacGCACCGGCAUCagCUGg -3'
miRNA:   3'- -GCCCU--AGUGua---UGUGGCCGUGGa-GAC- -5'
19524 3' -55 NC_004685.1 + 67873 0.76 0.256273
Target:  5'- uGGGAUCGCGgcGCGCCGGCGUCgcgCUGg -3'
miRNA:   3'- gCCCUAGUGUa-UGUGGCCGUGGa--GAC- -5'
19524 3' -55 NC_004685.1 + 55628 1.08 0.001651
Target:  5'- cCGGGAUCACAUACACCGGCACCUCUGu -3'
miRNA:   3'- -GCCCUAGUGUAUGUGGCCGUGGAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.