miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19524 5' -62.3 NC_004685.1 + 53352 0.66 0.428528
Target:  5'- cUCCaGCGCgGCGccGGUggccgcgGCGAUGCUGg -3'
miRNA:   3'- -AGGgCGCGaCGCucCCA-------CGCUGCGAC- -5'
19524 5' -62.3 NC_004685.1 + 16974 0.66 0.420471
Target:  5'- gCCCG-GCcgGCGAGGGUGgGcagaccugcCGCUGc -3'
miRNA:   3'- aGGGCgCGa-CGCUCCCACgCu--------GCGAC- -5'
19524 5' -62.3 NC_004685.1 + 33742 0.66 0.39429
Target:  5'- aUCCCGcCGCUgcccgGCGAGacguGGUGCGucguCGCg- -3'
miRNA:   3'- -AGGGC-GCGA-----CGCUC----CCACGCu---GCGac -5'
19524 5' -62.3 NC_004685.1 + 37499 0.67 0.345204
Target:  5'- aCCCGCccaGCccugGCGA-GGUGUGGCGCg- -3'
miRNA:   3'- aGGGCG---CGa---CGCUcCCACGCUGCGac -5'
19524 5' -62.3 NC_004685.1 + 538 0.68 0.322358
Target:  5'- gCCCGCcaGCagcGCGcGGGUGuCGACGCa- -3'
miRNA:   3'- aGGGCG--CGa--CGCuCCCAC-GCUGCGac -5'
19524 5' -62.3 NC_004685.1 + 35212 0.69 0.293683
Target:  5'- gUCgCGCGCacggUGCGGauGGagacGUGCGGCGCUGu -3'
miRNA:   3'- -AGgGCGCG----ACGCU--CC----CACGCUGCGAC- -5'
19524 5' -62.3 NC_004685.1 + 4211 0.69 0.293683
Target:  5'- --gCGUGCgGCGAGGaGUGCGACGaCa- -3'
miRNA:   3'- aggGCGCGaCGCUCC-CACGCUGC-Gac -5'
19524 5' -62.3 NC_004685.1 + 1078 0.7 0.236519
Target:  5'- gCCCGCGCaguccUGCGGGcGGaUGCGGgGCa- -3'
miRNA:   3'- aGGGCGCG-----ACGCUC-CC-ACGCUgCGac -5'
19524 5' -62.3 NC_004685.1 + 20425 0.7 0.219648
Target:  5'- -aCCGCcaagGCggGCGAGGuGUGCG-CGCUGa -3'
miRNA:   3'- agGGCG----CGa-CGCUCC-CACGCuGCGAC- -5'
19524 5' -62.3 NC_004685.1 + 10638 0.71 0.198761
Target:  5'- aCCUGaaGCUGCccaAGGGUGCGAUGCUc -3'
miRNA:   3'- aGGGCg-CGACGc--UCCCACGCUGCGAc -5'
19524 5' -62.3 NC_004685.1 + 31059 0.72 0.183783
Target:  5'- aCCUacgcgaaGCGCUcgGCGAcauGGGUGCGGCGCUc -3'
miRNA:   3'- aGGG-------CGCGA--CGCU---CCCACGCUGCGAc -5'
19524 5' -62.3 NC_004685.1 + 724 0.72 0.179625
Target:  5'- aUCCCGaCGCcgUGCGAGccgaGGUGCcGACGCa- -3'
miRNA:   3'- -AGGGC-GCG--ACGCUC----CCACG-CUGCGac -5'
19524 5' -62.3 NC_004685.1 + 25874 0.72 0.166364
Target:  5'- gCCCGCGCagGUcGGGGcgGcCGACGCUGa -3'
miRNA:   3'- aGGGCGCGa-CGcUCCCa-C-GCUGCGAC- -5'
19524 5' -62.3 NC_004685.1 + 16320 0.76 0.095832
Target:  5'- aUCCCGCGCUGgugaCGGGcGGUGCcACGCUc -3'
miRNA:   3'- -AGGGCGCGAC----GCUC-CCACGcUGCGAc -5'
19524 5' -62.3 NC_004685.1 + 14274 0.76 0.090831
Target:  5'- gUCUgGCGauggaaagcCUGacCGAGGGUGCGACGCUGg -3'
miRNA:   3'- -AGGgCGC---------GAC--GCUCCCACGCUGCGAC- -5'
19524 5' -62.3 NC_004685.1 + 55665 1.08 0.000323
Target:  5'- cUCCCGCGCUGCGAGGGUGCGACGCUGg -3'
miRNA:   3'- -AGGGCGCGACGCUCCCACGCUGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.