miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19525 3' -59.7 NC_004685.1 + 32795 0.66 0.587319
Target:  5'- gCCcGaCGUGCccgCGGCCGCGGccGACGa -3'
miRNA:   3'- -GGuCaGCACGa--GCCGGCGCCccUUGU- -5'
19525 3' -59.7 NC_004685.1 + 60332 0.66 0.566689
Target:  5'- aUCAGcUCGUGCUgCGGCCGCGccGucCAg -3'
miRNA:   3'- -GGUC-AGCACGA-GCCGGCGCccCuuGU- -5'
19525 3' -59.7 NC_004685.1 + 44969 0.66 0.556442
Target:  5'- gCAGUCGUcGUgUCGgaGCUGUGGGaGAACAa -3'
miRNA:   3'- gGUCAGCA-CG-AGC--CGGCGCCC-CUUGU- -5'
19525 3' -59.7 NC_004685.1 + 61941 0.67 0.536116
Target:  5'- gCGGUCGUGCacguccUGGCUGCGGGc---- -3'
miRNA:   3'- gGUCAGCACGa-----GCCGGCGCCCcuugu -5'
19525 3' -59.7 NC_004685.1 + 59560 0.67 0.526049
Target:  5'- uCgGGUCGcagcauguUGCgcaggCGGCgGCGGGuGAGCGc -3'
miRNA:   3'- -GgUCAGC--------ACGa----GCCGgCGCCC-CUUGU- -5'
19525 3' -59.7 NC_004685.1 + 942 0.67 0.516055
Target:  5'- gCAGUCcUGCgggCGGauGCGGGGcACGg -3'
miRNA:   3'- gGUCAGcACGa--GCCggCGCCCCuUGU- -5'
19525 3' -59.7 NC_004685.1 + 57246 0.67 0.516055
Target:  5'- aCCGGgc--GCUCGGCgGCGGGcGGucACAg -3'
miRNA:   3'- -GGUCagcaCGAGCCGgCGCCC-CU--UGU- -5'
19525 3' -59.7 NC_004685.1 + 62789 0.67 0.516055
Target:  5'- aCCGGggaaCGccUGCUgaaCGGCCG-GGGGAACc -3'
miRNA:   3'- -GGUCa---GC--ACGA---GCCGGCgCCCCUUGu -5'
19525 3' -59.7 NC_004685.1 + 33579 0.67 0.506138
Target:  5'- uCCGG-CGUGgUCaccgugggacgaGGCCGCGGuGGACAu -3'
miRNA:   3'- -GGUCaGCACgAG------------CCGGCGCCcCUUGU- -5'
19525 3' -59.7 NC_004685.1 + 56980 0.68 0.467341
Target:  5'- aCCGGcuUCGgcgGCUCaGGCuUGCGGGcGAACu -3'
miRNA:   3'- -GGUC--AGCa--CGAG-CCG-GCGCCC-CUUGu -5'
19525 3' -59.7 NC_004685.1 + 36887 0.68 0.430134
Target:  5'- --cGUCG-GCcgCGGCCGCGGGcacgucgggcaGAACAc -3'
miRNA:   3'- gguCAGCaCGa-GCCGGCGCCC-----------CUUGU- -5'
19525 3' -59.7 NC_004685.1 + 1901 0.69 0.421107
Target:  5'- gCGGcCGUGCccgcugCGGCCGCGGuuGGCGu -3'
miRNA:   3'- gGUCaGCACGa-----GCCGGCGCCccUUGU- -5'
19525 3' -59.7 NC_004685.1 + 53158 0.69 0.4034
Target:  5'- gCGGUCGccUUCGGCCGCaGGcuGGAGCGg -3'
miRNA:   3'- gGUCAGCacGAGCCGGCG-CC--CCUUGU- -5'
19525 3' -59.7 NC_004685.1 + 48773 0.69 0.394725
Target:  5'- gCCGGUCuucugaUGgUCGGCCGCGcGGGcAUAg -3'
miRNA:   3'- -GGUCAGc-----ACgAGCCGGCGC-CCCuUGU- -5'
19525 3' -59.7 NC_004685.1 + 47687 0.69 0.377742
Target:  5'- gCGGUCGauUUCGGCCGCGgcuuuggcGGGGACu -3'
miRNA:   3'- gGUCAGCacGAGCCGGCGC--------CCCUUGu -5'
19525 3' -59.7 NC_004685.1 + 38368 0.7 0.353204
Target:  5'- cCCAGUCGUgGCUCGGCaagGCGGcGuucGCGu -3'
miRNA:   3'- -GGUCAGCA-CGAGCCGg--CGCCcCu--UGU- -5'
19525 3' -59.7 NC_004685.1 + 17481 0.7 0.344494
Target:  5'- -aGGUCaUGUUCGgguguagcgccacGCUGCGGGGAGCAc -3'
miRNA:   3'- ggUCAGcACGAGC-------------CGGCGCCCCUUGU- -5'
19525 3' -59.7 NC_004685.1 + 46078 0.72 0.260232
Target:  5'- cCCAGUgGUGCcagauccaUCGaCCGCGGGGGccGCGa -3'
miRNA:   3'- -GGUCAgCACG--------AGCcGGCGCCCCU--UGU- -5'
19525 3' -59.7 NC_004685.1 + 49299 0.73 0.238281
Target:  5'- cCCAGcCGUgcucaucgagguacuGCUCGGCCGCGGccAGCAg -3'
miRNA:   3'- -GGUCaGCA---------------CGAGCCGGCGCCccUUGU- -5'
19525 3' -59.7 NC_004685.1 + 56061 1.09 0.000542
Target:  5'- cCCAGUCGUGCUCGGCCGCGGGGAACAc -3'
miRNA:   3'- -GGUCAGCACGAGCCGGCGCCCCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.