miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19525 5' -54 NC_004685.1 + 31456 0.66 0.850302
Target:  5'- cGGCGg---UUACGGCAGCAGCg---- -3'
miRNA:   3'- -CCGCaguaGGUGCCGUUGUCGaaccu -5'
19525 5' -54 NC_004685.1 + 14820 0.66 0.850302
Target:  5'- uGGCGg---CgGCGGCugcGCAGCUgccGGAg -3'
miRNA:   3'- -CCGCaguaGgUGCCGu--UGUCGAa--CCU- -5'
19525 5' -54 NC_004685.1 + 42462 0.66 0.841737
Target:  5'- gGGUGcCAacggCCugGGCAGCGGCa---- -3'
miRNA:   3'- -CCGCaGUa---GGugCCGUUGUCGaaccu -5'
19525 5' -54 NC_004685.1 + 50424 0.66 0.832956
Target:  5'- gGGCcUCAUCCACGacgucGCAgaACAcCUUGGGc -3'
miRNA:   3'- -CCGcAGUAGGUGC-----CGU--UGUcGAACCU- -5'
19525 5' -54 NC_004685.1 + 54737 0.66 0.832956
Target:  5'- aGGCG-CAcgCCACGGCGggggACAGgUUGa- -3'
miRNA:   3'- -CCGCaGUa-GGUGCCGU----UGUCgAACcu -5'
19525 5' -54 NC_004685.1 + 10669 0.66 0.824873
Target:  5'- cGGCGUCucgggCUGCGGCAAaacccuguccugccaGGCgUUGGGc -3'
miRNA:   3'- -CCGCAGua---GGUGCCGUUg--------------UCG-AACCU- -5'
19525 5' -54 NC_004685.1 + 17172 0.66 0.823965
Target:  5'- cGGCGUUcgCCGCGGC-GCuGCg---- -3'
miRNA:   3'- -CCGCAGuaGGUGCCGuUGuCGaaccu -5'
19525 5' -54 NC_004685.1 + 26625 0.66 0.814775
Target:  5'- uGGCG-CAUCUggGGCAGCcaGGCcgcGGAg -3'
miRNA:   3'- -CCGCaGUAGGugCCGUUG--UCGaa-CCU- -5'
19525 5' -54 NC_004685.1 + 62488 0.66 0.814775
Target:  5'- gGGUGaCAggaacgCCACGGCcgggccucccGACGGCUcGGAc -3'
miRNA:   3'- -CCGCaGUa-----GGUGCCG----------UUGUCGAaCCU- -5'
19525 5' -54 NC_004685.1 + 22464 0.67 0.805396
Target:  5'- cGCGUCGggUCGCGGCG--AGCU-GGAc -3'
miRNA:   3'- cCGCAGUa-GGUGCCGUugUCGAaCCU- -5'
19525 5' -54 NC_004685.1 + 3239 0.67 0.805396
Target:  5'- cGGgGUCGggccggaCCAuCGGCGcCGGUUUGGGu -3'
miRNA:   3'- -CCgCAGUa------GGU-GCCGUuGUCGAACCU- -5'
19525 5' -54 NC_004685.1 + 11570 0.67 0.795837
Target:  5'- cGUGUCggcuGUCCACGGCAggucGCGGCg---- -3'
miRNA:   3'- cCGCAG----UAGGUGCCGU----UGUCGaaccu -5'
19525 5' -54 NC_004685.1 + 52165 0.67 0.794872
Target:  5'- gGGCGUCGccacgCCACGGgAagacgugcuccccGCAGCgUGGc -3'
miRNA:   3'- -CCGCAGUa----GGUGCCgU-------------UGUCGaACCu -5'
19525 5' -54 NC_004685.1 + 25702 0.67 0.776224
Target:  5'- aGGCuGUCAcgcucCCACGGCGGgAGUgcgUGGu -3'
miRNA:   3'- -CCG-CAGUa----GGUGCCGUUgUCGa--ACCu -5'
19525 5' -54 NC_004685.1 + 38789 0.67 0.766192
Target:  5'- cGGCGguucgcacacCAUCCGCGGUcGCAGCgaaGAc -3'
miRNA:   3'- -CCGCa---------GUAGGUGCCGuUGUCGaacCU- -5'
19525 5' -54 NC_004685.1 + 33769 0.68 0.745729
Target:  5'- uGCGUCGUCgCGgguguCGGCGACAGCg---- -3'
miRNA:   3'- cCGCAGUAG-GU-----GCCGUUGUCGaaccu -5'
19525 5' -54 NC_004685.1 + 42849 0.68 0.735322
Target:  5'- cGGCGgCA---ACGGCGGCGGCUcaaUGGGu -3'
miRNA:   3'- -CCGCaGUaggUGCCGUUGUCGA---ACCU- -5'
19525 5' -54 NC_004685.1 + 17278 0.68 0.724812
Target:  5'- gGGuCGUCggCCACGGCuuCgAGCagUGGGc -3'
miRNA:   3'- -CC-GCAGuaGGUGCCGuuG-UCGa-ACCU- -5'
19525 5' -54 NC_004685.1 + 29385 0.68 0.724812
Target:  5'- gGGCGUCggCCGgaugcugcuuucCGGCGAaGGCcUGGAg -3'
miRNA:   3'- -CCGCAGuaGGU------------GCCGUUgUCGaACCU- -5'
19525 5' -54 NC_004685.1 + 28280 0.68 0.724812
Target:  5'- cGCGUCGUCgAUguaGGCGaugaGCGGCgaggUGGAu -3'
miRNA:   3'- cCGCAGUAGgUG---CCGU----UGUCGa---ACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.