Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19526 | 3' | -52.4 | NC_004685.1 | + | 55479 | 0.66 | 0.899556 |
Target: 5'- uUGUCGGUGGGCUugggcGggGUGcCgaCGUAa -3' miRNA: 3'- -AUAGCCGCCCGA-----CuuCAUaGa-GCAUg -5' |
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19526 | 3' | -52.4 | NC_004685.1 | + | 10561 | 0.66 | 0.88499 |
Target: 5'- cGUgGGCGGGCUGGAcGUGUUcaaggaGUGg -3' miRNA: 3'- aUAgCCGCCCGACUU-CAUAGag----CAUg -5' |
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19526 | 3' | -52.4 | NC_004685.1 | + | 62763 | 0.67 | 0.852713 |
Target: 5'- --aCGGUGGGCUGAGGcacCUgCGUcGCa -3' miRNA: 3'- auaGCCGCCCGACUUCauaGA-GCA-UG- -5' |
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19526 | 3' | -52.4 | NC_004685.1 | + | 2256 | 0.67 | 0.825983 |
Target: 5'- --cCGGcCGGGCUGA--UGUCU-GUGCa -3' miRNA: 3'- auaGCC-GCCCGACUucAUAGAgCAUG- -5' |
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19526 | 3' | -52.4 | NC_004685.1 | + | 6099 | 0.69 | 0.756774 |
Target: 5'- --aCGGCGGGCUGuccGGcGUCaUCGUucACa -3' miRNA: 3'- auaGCCGCCCGACu--UCaUAG-AGCA--UG- -5' |
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19526 | 3' | -52.4 | NC_004685.1 | + | 63149 | 0.72 | 0.537096 |
Target: 5'- uUGUCGGUGGGCUGGccgGUCUUGa-- -3' miRNA: 3'- -AUAGCCGCCCGACUucaUAGAGCaug -5' |
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19526 | 3' | -52.4 | NC_004685.1 | + | 56415 | 1.09 | 0.00226 |
Target: 5'- gUAUCGGCGGGCUGAAGUAUCUCGUACa -3' miRNA: 3'- -AUAGCCGCCCGACUUCAUAGAGCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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