miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19526 5' -59.5 NC_004685.1 + 25814 0.66 0.589279
Target:  5'- gUGGGCCgguCAGCgCCGCGGgcuCUCGCCCGu -3'
miRNA:   3'- gACUUGG---GUUG-GGUGCC---GGGUGGGCu -5'
19526 5' -59.5 NC_004685.1 + 53082 0.66 0.589279
Target:  5'- -gGAGCgCAGCUCGuCGGCCCACaUCa- -3'
miRNA:   3'- gaCUUGgGUUGGGU-GCCGGGUG-GGcu -5'
19526 5' -59.5 NC_004685.1 + 39275 0.66 0.589279
Target:  5'- ---cGCCUcGCCguguuCGGCCCGCCCGu -3'
miRNA:   3'- gacuUGGGuUGGgu---GCCGGGUGGGCu -5'
19526 5' -59.5 NC_004685.1 + 42807 0.66 0.589279
Target:  5'- gUGGACCCuGGCUCcCGGCCagguCGCCCu- -3'
miRNA:   3'- gACUUGGG-UUGGGuGCCGG----GUGGGcu -5'
19526 5' -59.5 NC_004685.1 + 53969 0.66 0.589279
Target:  5'- -cGAGcCCCAACUCGgggUGGCCCaggACUCGGg -3'
miRNA:   3'- gaCUU-GGGUUGGGU---GCCGGG---UGGGCU- -5'
19526 5' -59.5 NC_004685.1 + 44064 0.66 0.589279
Target:  5'- --cAACCgCGACCUGCGGUCgGCCgGGa -3'
miRNA:   3'- gacUUGG-GUUGGGUGCCGGgUGGgCU- -5'
19526 5' -59.5 NC_004685.1 + 51613 0.66 0.589279
Target:  5'- uCUGcGGCCCGaaGCCCAggUGGCCCACg--- -3'
miRNA:   3'- -GAC-UUGGGU--UGGGU--GCCGGGUGggcu -5'
19526 5' -59.5 NC_004685.1 + 36756 0.66 0.578865
Target:  5'- gCUGuGCCCAuCCCugcGCaGCCCuucgacuggcgGCCCGAg -3'
miRNA:   3'- -GACuUGGGUuGGG---UGcCGGG-----------UGGGCU- -5'
19526 5' -59.5 NC_004685.1 + 11329 0.66 0.578865
Target:  5'- aUGGGCCgugcgCGACCgGCGaCCCGCCcCGAc -3'
miRNA:   3'- gACUUGG-----GUUGGgUGCcGGGUGG-GCU- -5'
19526 5' -59.5 NC_004685.1 + 65183 0.66 0.578865
Target:  5'- uCUGccauGCCC--CCCACGaaCCCAUCCGAg -3'
miRNA:   3'- -GACu---UGGGuuGGGUGCc-GGGUGGGCU- -5'
19526 5' -59.5 NC_004685.1 + 31108 0.66 0.568491
Target:  5'- -aGAACUCGgugauGCCCGCGaugcCCCAgCCGAu -3'
miRNA:   3'- gaCUUGGGU-----UGGGUGCc---GGGUgGGCU- -5'
19526 5' -59.5 NC_004685.1 + 66373 0.66 0.568491
Target:  5'- -aGAACCuCGACCUGCaaCCC-CCCGAg -3'
miRNA:   3'- gaCUUGG-GUUGGGUGccGGGuGGGCU- -5'
19526 5' -59.5 NC_004685.1 + 16884 0.66 0.558165
Target:  5'- -aGAagGCCCccgcuaagaAGgCCACGGCCCGCCg-- -3'
miRNA:   3'- gaCU--UGGG---------UUgGGUGCCGGGUGGgcu -5'
19526 5' -59.5 NC_004685.1 + 34128 0.66 0.558165
Target:  5'- -cGGGCgCGaucagcaguGCCCACGGCCCcacguagucgacGCCCa- -3'
miRNA:   3'- gaCUUGgGU---------UGGGUGCCGGG------------UGGGcu -5'
19526 5' -59.5 NC_004685.1 + 24736 0.66 0.558165
Target:  5'- aUGAACCUGGCCCugucggacuccgACGGCa-ACUCGAu -3'
miRNA:   3'- gACUUGGGUUGGG------------UGCCGggUGGGCU- -5'
19526 5' -59.5 NC_004685.1 + 57467 0.66 0.557135
Target:  5'- uCUucGCUCGGCUCgaagucgAUGGCCCGCCCGc -3'
miRNA:   3'- -GAcuUGGGUUGGG-------UGCCGGGUGGGCu -5'
19526 5' -59.5 NC_004685.1 + 48058 0.66 0.537679
Target:  5'- -gGGugCCGACCCGCuGCUcgaagCACUCGAu -3'
miRNA:   3'- gaCUugGGUUGGGUGcCGG-----GUGGGCU- -5'
19526 5' -59.5 NC_004685.1 + 17155 0.66 0.534628
Target:  5'- gCUGAACCUGAUggcgucggcguucgCCGCGGCgCUgcGCCUGAu -3'
miRNA:   3'- -GACUUGGGUUG--------------GGUGCCG-GG--UGGGCU- -5'
19526 5' -59.5 NC_004685.1 + 33069 0.67 0.527533
Target:  5'- aUGAGCUU-GCCCGCGGCgagcgCACCCGc -3'
miRNA:   3'- gACUUGGGuUGGGUGCCGg----GUGGGCu -5'
19526 5' -59.5 NC_004685.1 + 1680 0.67 0.527533
Target:  5'- gUG-ACCCAGCCguCGGgCCAgCCCa- -3'
miRNA:   3'- gACuUGGGUUGGguGCCgGGU-GGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.