miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19527 5' -58.6 NC_004685.1 + 7194 0.66 0.657727
Target:  5'- aGGC-CCGGCCG--UGG-CGuUCCUGUCa -3'
miRNA:   3'- -CCGaGGCCGGUcaGCUaGC-AGGACGG- -5'
19527 5' -58.6 NC_004685.1 + 40796 0.66 0.657727
Target:  5'- uGGUUCCggcGGCCGGUCag-CGcCUUGCg -3'
miRNA:   3'- -CCGAGG---CCGGUCAGcuaGCaGGACGg -5'
19527 5' -58.6 NC_004685.1 + 10176 0.66 0.657727
Target:  5'- uGGCacaGGCCA-UC-AUCGUCCUGUCc -3'
miRNA:   3'- -CCGaggCCGGUcAGcUAGCAGGACGG- -5'
19527 5' -58.6 NC_004685.1 + 45397 0.66 0.657727
Target:  5'- gGGCaCCGGCCcacauGUUGAcuacggaauUgGUCCgGCCa -3'
miRNA:   3'- -CCGaGGCCGGu----CAGCU---------AgCAGGaCGG- -5'
19527 5' -58.6 NC_004685.1 + 30523 0.66 0.657727
Target:  5'- gGGCgaacgggCCGGUCAGUCaGAUCGaCCcagauaagGUCg -3'
miRNA:   3'- -CCGa------GGCCGGUCAG-CUAGCaGGa-------CGG- -5'
19527 5' -58.6 NC_004685.1 + 32751 0.66 0.65459
Target:  5'- uGGUggaCCGGCCgccaGGUUGGUggcgaaacccucggUGUUCUGCCc -3'
miRNA:   3'- -CCGa--GGCCGG----UCAGCUA--------------GCAGGACGG- -5'
19527 5' -58.6 NC_004685.1 + 65931 0.66 0.647265
Target:  5'- aGCUUCGGCCGGgCGAacacgUCGcCCaGCg -3'
miRNA:   3'- cCGAGGCCGGUCaGCU-----AGCaGGaCGg -5'
19527 5' -58.6 NC_004685.1 + 11003 0.66 0.640981
Target:  5'- aGUUCCugcgcaagGGCCgcuucgaugagguguGGUgGAUCGaCCUGCCg -3'
miRNA:   3'- cCGAGG--------CCGG---------------UCAgCUAGCaGGACGG- -5'
19527 5' -58.6 NC_004685.1 + 59311 0.66 0.636791
Target:  5'- uGGCgacgcgCUGcGCaCGGUCGGUCuGcUCCUGCg -3'
miRNA:   3'- -CCGa-----GGC-CG-GUCAGCUAG-C-AGGACGg -5'
19527 5' -58.6 NC_004685.1 + 4133 0.66 0.635743
Target:  5'- uGGgaUCGGCCAGUucuccgaCGAccUCGgcgagCUUGCCg -3'
miRNA:   3'- -CCgaGGCCGGUCA-------GCU--AGCa----GGACGG- -5'
19527 5' -58.6 NC_004685.1 + 3881 0.66 0.615839
Target:  5'- uGCUCgGGugucauCCGGUCGAgcacCGUCUgGCCu -3'
miRNA:   3'- cCGAGgCC------GGUCAGCUa---GCAGGaCGG- -5'
19527 5' -58.6 NC_004685.1 + 21522 0.67 0.594939
Target:  5'- cGCUUCGGCCAGggcgucaugggcUCGAUC-UCCgGUa -3'
miRNA:   3'- cCGAGGCCGGUC------------AGCUAGcAGGaCGg -5'
19527 5' -58.6 NC_004685.1 + 19193 0.67 0.585567
Target:  5'- gGGCUgCCGGCCGGuUCGugucagcgaugaaguUUGgCCUGCg -3'
miRNA:   3'- -CCGA-GGCCGGUC-AGCu--------------AGCaGGACGg -5'
19527 5' -58.6 NC_004685.1 + 14009 0.67 0.577261
Target:  5'- cGGUUCCGGCgacgaggCGGUCGAguUCGccaacggcagccgcaUCCUGUUc -3'
miRNA:   3'- -CCGAGGCCG-------GUCAGCU--AGC---------------AGGACGG- -5'
19527 5' -58.6 NC_004685.1 + 14075 0.67 0.573117
Target:  5'- cGGCUUCGGCCGaggcaucccaggcGUCGA-CGUgCUGauguCCg -3'
miRNA:   3'- -CCGAGGCCGGU-------------CAGCUaGCAgGAC----GG- -5'
19527 5' -58.6 NC_004685.1 + 61001 0.67 0.563821
Target:  5'- cGCaggCCGuGCCGG-CGAugcacaUCGUCgUGCCg -3'
miRNA:   3'- cCGa--GGC-CGGUCaGCU------AGCAGgACGG- -5'
19527 5' -58.6 NC_004685.1 + 59470 0.67 0.553539
Target:  5'- cGGCcagaCCGGCCAGcCGccaGUCCU-CCg -3'
miRNA:   3'- -CCGa---GGCCGGUCaGCuagCAGGAcGG- -5'
19527 5' -58.6 NC_004685.1 + 29897 0.67 0.553539
Target:  5'- uGGCUgaGGCCuGGcUGuUCGUCCaUGCCg -3'
miRNA:   3'- -CCGAggCCGG-UCaGCuAGCAGG-ACGG- -5'
19527 5' -58.6 NC_004685.1 + 2054 0.67 0.553539
Target:  5'- uGCUCCGauuccCCGGg-GAUC-UCCUGCCa -3'
miRNA:   3'- cCGAGGCc----GGUCagCUAGcAGGACGG- -5'
19527 5' -58.6 NC_004685.1 + 25587 0.67 0.543313
Target:  5'- cGGagCCGGCCGuGUucagguucuggaUGGUCGUCCcgGCCg -3'
miRNA:   3'- -CCgaGGCCGGU-CA------------GCUAGCAGGa-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.