miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19528 5' -47.1 NC_004685.1 + 38913 0.66 0.996318
Target:  5'- ---cUUGCCGAAGcggAGUcacccgGCUUGAGCa -3'
miRNA:   3'- cagaAACGGCUUCa--UCA------UGAGCUUGc -5'
19528 5' -47.1 NC_004685.1 + 21546 0.66 0.995628
Target:  5'- -----aGCCGggGUGGUGC-CGGcAUGa -3'
miRNA:   3'- cagaaaCGGCuuCAUCAUGaGCU-UGC- -5'
19528 5' -47.1 NC_004685.1 + 31645 0.66 0.995628
Target:  5'- --gUUUGCCG-AGUAc--CUCGAACGg -3'
miRNA:   3'- cagAAACGGCuUCAUcauGAGCUUGC- -5'
19528 5' -47.1 NC_004685.1 + 38596 0.66 0.994835
Target:  5'- ----aUGCCGAAGUcg-GCgUCGAGCGc -3'
miRNA:   3'- cagaaACGGCUUCAucaUG-AGCUUGC- -5'
19528 5' -47.1 NC_004685.1 + 43652 0.66 0.99393
Target:  5'- cGUCgcUGCCgcgguGAAGUGGcACcgCGAACGg -3'
miRNA:   3'- -CAGaaACGG-----CUUCAUCaUGa-GCUUGC- -5'
19528 5' -47.1 NC_004685.1 + 28522 0.67 0.99301
Target:  5'- gGUCgcggGCCGcgagaagcacgacguGGUGGUcaACUCGAACGc -3'
miRNA:   3'- -CAGaaa-CGGCu--------------UCAUCA--UGAGCUUGC- -5'
19528 5' -47.1 NC_004685.1 + 54919 0.67 0.992902
Target:  5'- cGUCggcuugGCUGAGccgcUGGUACUCGAugGc -3'
miRNA:   3'- -CAGaaa---CGGCUUc---AUCAUGAGCUugC- -5'
19528 5' -47.1 NC_004685.1 + 27571 0.67 0.99043
Target:  5'- uUCUUUGCCGGGuaGGUGCggCGGAa- -3'
miRNA:   3'- cAGAAACGGCUUcaUCAUGa-GCUUgc -5'
19528 5' -47.1 NC_004685.1 + 64555 0.68 0.985512
Target:  5'- cGUCguugUUGCCGAGcGcGGU-CUCGAugGc -3'
miRNA:   3'- -CAGa---AACGGCUU-CaUCAuGAGCUugC- -5'
19528 5' -47.1 NC_004685.1 + 42299 0.69 0.976209
Target:  5'- gGUCUcgGCuCGAAGg---ACUCGAACa -3'
miRNA:   3'- -CAGAaaCG-GCUUCaucaUGAGCUUGc -5'
19528 5' -47.1 NC_004685.1 + 15091 0.69 0.963138
Target:  5'- cUCggUGCCGAGGUcc-GCUCGggUGu -3'
miRNA:   3'- cAGaaACGGCUUCAucaUGAGCuuGC- -5'
19528 5' -47.1 NC_004685.1 + 1406 0.7 0.94067
Target:  5'- cGUCgccucgGCUGAGGUAGaccuuCUCGAGCa -3'
miRNA:   3'- -CAGaaa---CGGCUUCAUCau---GAGCUUGc -5'
19528 5' -47.1 NC_004685.1 + 25712 0.71 0.910842
Target:  5'- gGUCUUUGCgCGggGUGGgccaggcgcACUCGAugcCGa -3'
miRNA:   3'- -CAGAAACG-GCuuCAUCa--------UGAGCUu--GC- -5'
19528 5' -47.1 NC_004685.1 + 56761 1.09 0.009127
Target:  5'- aGUCUUUGCCGAAGUAGUACUCGAACGc -3'
miRNA:   3'- -CAGAAACGGCUUCAUCAUGAGCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.