Results 1 - 14 of 14 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19528 | 5' | -47.1 | NC_004685.1 | + | 1406 | 0.7 | 0.94067 |
Target: 5'- cGUCgccucgGCUGAGGUAGaccuuCUCGAGCa -3' miRNA: 3'- -CAGaaa---CGGCUUCAUCau---GAGCUUGc -5' |
|||||||
19528 | 5' | -47.1 | NC_004685.1 | + | 15091 | 0.69 | 0.963138 |
Target: 5'- cUCggUGCCGAGGUcc-GCUCGggUGu -3' miRNA: 3'- cAGaaACGGCUUCAucaUGAGCuuGC- -5' |
|||||||
19528 | 5' | -47.1 | NC_004685.1 | + | 21546 | 0.66 | 0.995628 |
Target: 5'- -----aGCCGggGUGGUGC-CGGcAUGa -3' miRNA: 3'- cagaaaCGGCuuCAUCAUGaGCU-UGC- -5' |
|||||||
19528 | 5' | -47.1 | NC_004685.1 | + | 25712 | 0.71 | 0.910842 |
Target: 5'- gGUCUUUGCgCGggGUGGgccaggcgcACUCGAugcCGa -3' miRNA: 3'- -CAGAAACG-GCuuCAUCa--------UGAGCUu--GC- -5' |
|||||||
19528 | 5' | -47.1 | NC_004685.1 | + | 27571 | 0.67 | 0.99043 |
Target: 5'- uUCUUUGCCGGGuaGGUGCggCGGAa- -3' miRNA: 3'- cAGAAACGGCUUcaUCAUGa-GCUUgc -5' |
|||||||
19528 | 5' | -47.1 | NC_004685.1 | + | 28522 | 0.67 | 0.99301 |
Target: 5'- gGUCgcggGCCGcgagaagcacgacguGGUGGUcaACUCGAACGc -3' miRNA: 3'- -CAGaaa-CGGCu--------------UCAUCA--UGAGCUUGC- -5' |
|||||||
19528 | 5' | -47.1 | NC_004685.1 | + | 31645 | 0.66 | 0.995628 |
Target: 5'- --gUUUGCCG-AGUAc--CUCGAACGg -3' miRNA: 3'- cagAAACGGCuUCAUcauGAGCUUGC- -5' |
|||||||
19528 | 5' | -47.1 | NC_004685.1 | + | 38596 | 0.66 | 0.994835 |
Target: 5'- ----aUGCCGAAGUcg-GCgUCGAGCGc -3' miRNA: 3'- cagaaACGGCUUCAucaUG-AGCUUGC- -5' |
|||||||
19528 | 5' | -47.1 | NC_004685.1 | + | 38913 | 0.66 | 0.996318 |
Target: 5'- ---cUUGCCGAAGcggAGUcacccgGCUUGAGCa -3' miRNA: 3'- cagaAACGGCUUCa--UCA------UGAGCUUGc -5' |
|||||||
19528 | 5' | -47.1 | NC_004685.1 | + | 42299 | 0.69 | 0.976209 |
Target: 5'- gGUCUcgGCuCGAAGg---ACUCGAACa -3' miRNA: 3'- -CAGAaaCG-GCUUCaucaUGAGCUUGc -5' |
|||||||
19528 | 5' | -47.1 | NC_004685.1 | + | 43652 | 0.66 | 0.99393 |
Target: 5'- cGUCgcUGCCgcgguGAAGUGGcACcgCGAACGg -3' miRNA: 3'- -CAGaaACGG-----CUUCAUCaUGa-GCUUGC- -5' |
|||||||
19528 | 5' | -47.1 | NC_004685.1 | + | 54919 | 0.67 | 0.992902 |
Target: 5'- cGUCggcuugGCUGAGccgcUGGUACUCGAugGc -3' miRNA: 3'- -CAGaaa---CGGCUUc---AUCAUGAGCUugC- -5' |
|||||||
19528 | 5' | -47.1 | NC_004685.1 | + | 56761 | 1.09 | 0.009127 |
Target: 5'- aGUCUUUGCCGAAGUAGUACUCGAACGc -3' miRNA: 3'- -CAGAAACGGCUUCAUCAUGAGCUUGC- -5' |
|||||||
19528 | 5' | -47.1 | NC_004685.1 | + | 64555 | 0.68 | 0.985512 |
Target: 5'- cGUCguugUUGCCGAGcGcGGU-CUCGAugGc -3' miRNA: 3'- -CAGa---AACGGCUU-CaUCAuGAGCUugC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home