miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19529 5' -64.4 NC_004685.1 + 40863 0.66 0.320911
Target:  5'- -gCGCGGUGCUggCgucGCGGGCCGcgcggGCCUg -3'
miRNA:   3'- caGUGCCGCGG--Ga--CGCCCGGC-----UGGAa -5'
19529 5' -64.4 NC_004685.1 + 8690 0.66 0.320911
Target:  5'- aUCGcCGGCacGgCCUGCGuGGUCGACCc- -3'
miRNA:   3'- cAGU-GCCG--CgGGACGC-CCGGCUGGaa -5'
19529 5' -64.4 NC_004685.1 + 56549 0.66 0.320911
Target:  5'- cGUCugGGUGuacaCCCUGCGcGGCUucACCUUc -3'
miRNA:   3'- -CAGugCCGC----GGGACGC-CCGGc-UGGAA- -5'
19529 5' -64.4 NC_004685.1 + 39484 0.66 0.313596
Target:  5'- -cCGCGGCGCCCa---GGCCGACg-- -3'
miRNA:   3'- caGUGCCGCGGGacgcCCGGCUGgaa -5'
19529 5' -64.4 NC_004685.1 + 1743 0.66 0.313596
Target:  5'- -cCGCGGCGUCC-GCGGGCgaUGGCa-- -3'
miRNA:   3'- caGUGCCGCGGGaCGCCCG--GCUGgaa -5'
19529 5' -64.4 NC_004685.1 + 32612 0.66 0.313596
Target:  5'- -gCAcCGGCccGCCCccUGGGCCGACCa- -3'
miRNA:   3'- caGU-GCCG--CGGGacGCCCGGCUGGaa -5'
19529 5' -64.4 NC_004685.1 + 11590 0.66 0.29241
Target:  5'- gGUCGCGGCGagCCgcGCaGGCCGcACCa- -3'
miRNA:   3'- -CAGUGCCGCg-GGa-CGcCCGGC-UGGaa -5'
19529 5' -64.4 NC_004685.1 + 19689 0.66 0.29241
Target:  5'- -gCACGaGCGgCCgugGCGGGCCGAg--- -3'
miRNA:   3'- caGUGC-CGCgGGa--CGCCCGGCUggaa -5'
19529 5' -64.4 NC_004685.1 + 37847 0.67 0.271711
Target:  5'- --uGCGGCgcauaGCCCUGCGGcagcgggaucgacGCCGACUg- -3'
miRNA:   3'- cagUGCCG-----CGGGACGCC-------------CGGCUGGaa -5'
19529 5' -64.4 NC_004685.1 + 14449 0.67 0.259616
Target:  5'- --gGCGGCgaaaGCCCaGUGGGCCGAgCg- -3'
miRNA:   3'- cagUGCCG----CGGGaCGCCCGGCUgGaa -5'
19529 5' -64.4 NC_004685.1 + 12443 0.68 0.247363
Target:  5'- --gGCGGCaGCCCUGCgccccuGGGUCGACa-- -3'
miRNA:   3'- cagUGCCG-CGGGACG------CCCGGCUGgaa -5'
19529 5' -64.4 NC_004685.1 + 67877 0.68 0.229886
Target:  5'- aUCGCGGCGCgCCgGCGucgcGCUGGCCg- -3'
miRNA:   3'- cAGUGCCGCG-GGaCGCc---CGGCUGGaa -5'
19529 5' -64.4 NC_004685.1 + 45099 0.68 0.224296
Target:  5'- uGUC-CGGCGCCCgcuCGGGUCcGCCg- -3'
miRNA:   3'- -CAGuGCCGCGGGac-GCCCGGcUGGaa -5'
19529 5' -64.4 NC_004685.1 + 68735 0.68 0.218822
Target:  5'- gGUCGacgaGGCGCgCggaUGCGGGuuGACCa- -3'
miRNA:   3'- -CAGUg---CCGCGgG---ACGCCCggCUGGaa -5'
19529 5' -64.4 NC_004685.1 + 24555 0.68 0.218822
Target:  5'- cGUCgACGaGaCGCCCUGCGaagugaGGCUGGCCa- -3'
miRNA:   3'- -CAG-UGC-C-GCGGGACGC------CCGGCUGGaa -5'
19529 5' -64.4 NC_004685.1 + 9411 0.69 0.203082
Target:  5'- ---cUGGCGaagaccaucaCCCaUGCGGGCCGACCg- -3'
miRNA:   3'- caguGCCGC----------GGG-ACGCCCGGCUGGaa -5'
19529 5' -64.4 NC_004685.1 + 47613 0.69 0.193142
Target:  5'- aUgACGGCuCCCaGUGGGCCGugCUc -3'
miRNA:   3'- cAgUGCCGcGGGaCGCCCGGCugGAa -5'
19529 5' -64.4 NC_004685.1 + 2995 0.7 0.174535
Target:  5'- cGUCgGCGuGCGCCaCaGCGGGuuGACCg- -3'
miRNA:   3'- -CAG-UGC-CGCGG-GaCGCCCggCUGGaa -5'
19529 5' -64.4 NC_004685.1 + 66831 0.7 0.165844
Target:  5'- -cCGCGGUcacGCCCUGCacguuGGCCGGCCc- -3'
miRNA:   3'- caGUGCCG---CGGGACGc----CCGGCUGGaa -5'
19529 5' -64.4 NC_004685.1 + 49594 0.71 0.131375
Target:  5'- -cCGC-GCGCCCUcguagGCGGGCUGGCCg- -3'
miRNA:   3'- caGUGcCGCGGGA-----CGCCCGGCUGGaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.