miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19530 3' -53.5 NC_004685.1 + 208 0.66 0.89234
Target:  5'- gCGACGAg-----UGCGCGCUggugUGCGGc -3'
miRNA:   3'- -GCUGCUagaagaACGUGCGGa---GCGCC- -5'
19530 3' -53.5 NC_004685.1 + 7952 0.66 0.870039
Target:  5'- aCGGCGAUCaUCcgGCugGCCauaaUCGaGGg -3'
miRNA:   3'- -GCUGCUAGaAGaaCGugCGG----AGCgCC- -5'
19530 3' -53.5 NC_004685.1 + 54786 0.66 0.865316
Target:  5'- aGGCcaccacccgCUUGCGCuCCUCGCGGg -3'
miRNA:   3'- gCUGcuagaa---GAACGUGcGGAGCGCC- -5'
19530 3' -53.5 NC_004685.1 + 57916 0.66 0.86212
Target:  5'- uCGGCGAUggCUgcgUGCAgCuCCUCGCGGc -3'
miRNA:   3'- -GCUGCUA--GAagaACGU-GcGGAGCGCC- -5'
19530 3' -53.5 NC_004685.1 + 63409 0.67 0.828202
Target:  5'- gGAUGAgCUUgUcgcgcaccucgaUGCACGCCUCGUccaGGg -3'
miRNA:   3'- gCUGCUaGAAgA------------ACGUGCGGAGCG---CC- -5'
19530 3' -53.5 NC_004685.1 + 39247 0.67 0.819202
Target:  5'- gGACGGg---CUUGCccaGCGCCUCGUa- -3'
miRNA:   3'- gCUGCUagaaGAACG---UGCGGAGCGcc -5'
19530 3' -53.5 NC_004685.1 + 406 0.67 0.819202
Target:  5'- uCGGCGGuuUCUUCaccGCGCGCCUgcugUGCGu -3'
miRNA:   3'- -GCUGCU--AGAAGaa-CGUGCGGA----GCGCc -5'
19530 3' -53.5 NC_004685.1 + 55136 0.67 0.819202
Target:  5'- cCGACucGUCUaCcUGCGCGCCcUCGgGGg -3'
miRNA:   3'- -GCUGc-UAGAaGaACGUGCGG-AGCgCC- -5'
19530 3' -53.5 NC_004685.1 + 8678 0.68 0.800643
Target:  5'- aCGACGAUgUgcaUCgccgGCACgGCCUgCGUGGu -3'
miRNA:   3'- -GCUGCUAgA---AGaa--CGUG-CGGA-GCGCC- -5'
19530 3' -53.5 NC_004685.1 + 55901 0.68 0.791103
Target:  5'- cCGACGGUgUgggCcaGCACGCCaUCGgGGc -3'
miRNA:   3'- -GCUGCUAgAa--GaaCGUGCGG-AGCgCC- -5'
19530 3' -53.5 NC_004685.1 + 24181 0.68 0.761562
Target:  5'- cCGACGAUCacaccgGCAaugGCCuUCGCGGu -3'
miRNA:   3'- -GCUGCUAGaagaa-CGUg--CGG-AGCGCC- -5'
19530 3' -53.5 NC_004685.1 + 61934 0.68 0.761562
Target:  5'- aGACGAUgCggUCgUGCACGuCCUggcUGCGGg -3'
miRNA:   3'- gCUGCUA-Ga-AGaACGUGC-GGA---GCGCC- -5'
19530 3' -53.5 NC_004685.1 + 48771 0.69 0.74121
Target:  5'- uCGcCGGUCUUCUgaUGguCgGCCgCGCGGg -3'
miRNA:   3'- -GCuGCUAGAAGA--ACguG-CGGaGCGCC- -5'
19530 3' -53.5 NC_004685.1 + 60283 0.69 0.73915
Target:  5'- uGAUGGUCUUCgccaGCACGUguugcucaccgaUCGCGGu -3'
miRNA:   3'- gCUGCUAGAAGaa--CGUGCGg-----------AGCGCC- -5'
19530 3' -53.5 NC_004685.1 + 66072 0.69 0.730868
Target:  5'- gGGCGGUCguuggUGC-CGCCguagUCGCGGu -3'
miRNA:   3'- gCUGCUAGaaga-ACGuGCGG----AGCGCC- -5'
19530 3' -53.5 NC_004685.1 + 40849 0.71 0.602351
Target:  5'- uCGAUGGuUCUgcagCgcggUGCugGCgUCGCGGg -3'
miRNA:   3'- -GCUGCU-AGAa---Ga---ACGugCGgAGCGCC- -5'
19530 3' -53.5 NC_004685.1 + 52779 0.74 0.457137
Target:  5'- aGGCGGUCUUCUUGCGgcgggccgugGCCUUcuuaGCGGg -3'
miRNA:   3'- gCUGCUAGAAGAACGUg---------CGGAG----CGCC- -5'
19530 3' -53.5 NC_004685.1 + 60180 0.75 0.419048
Target:  5'- aGACGGUCauugaUUC-UGCAcCGCCUcCGCGGa -3'
miRNA:   3'- gCUGCUAG-----AAGaACGU-GCGGA-GCGCC- -5'
19530 3' -53.5 NC_004685.1 + 57707 0.75 0.40983
Target:  5'- aCGuCGAgcgcCUUCgaGCACGCCgCGCGGa -3'
miRNA:   3'- -GCuGCUa---GAAGaaCGUGCGGaGCGCC- -5'
19530 3' -53.5 NC_004685.1 + 47721 0.77 0.294845
Target:  5'- cCGACGA-CUUCguagcUGCGCGCCUCGgagcCGGa -3'
miRNA:   3'- -GCUGCUaGAAGa----ACGUGCGGAGC----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.