miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19530 5' -55.7 NC_004685.1 + 62734 0.66 0.799088
Target:  5'- uGGCUGCGGGCUUgACcggcUCGGgGgccacggUGGg -3'
miRNA:   3'- -CUGGCGCUCGAAgUGc---AGCCgCa------ACC- -5'
19530 5' -55.7 NC_004685.1 + 54049 0.66 0.799088
Target:  5'- uGCCGCGGGCgauggcUCGcCGUCGcgacucggaGCGUUGc -3'
miRNA:   3'- cUGGCGCUCGa-----AGU-GCAGC---------CGCAACc -5'
19530 5' -55.7 NC_004685.1 + 22910 0.66 0.780029
Target:  5'- aGACCGcCGAGCUUCAguUCGaCG-UGGc -3'
miRNA:   3'- -CUGGC-GCUCGAAGUgcAGCcGCaACC- -5'
19530 5' -55.7 NC_004685.1 + 25627 0.66 0.780029
Target:  5'- cGACCGCaGGucGCggUugGUUGGCGU-GGu -3'
miRNA:   3'- -CUGGCG-CU--CGaaGugCAGCCGCAaCC- -5'
19530 5' -55.7 NC_004685.1 + 45074 0.66 0.770278
Target:  5'- aACCGCGAGgUggGCG-CGGUGUggccGGa -3'
miRNA:   3'- cUGGCGCUCgAagUGCaGCCGCAa---CC- -5'
19530 5' -55.7 NC_004685.1 + 50235 0.66 0.760391
Target:  5'- cGACCGcCGAcGCgcCACGcaCGGCGUUcGGc -3'
miRNA:   3'- -CUGGC-GCU-CGaaGUGCa-GCCGCAA-CC- -5'
19530 5' -55.7 NC_004685.1 + 32208 0.67 0.740258
Target:  5'- cGGCgGCG-GCUUCAagGUgGGCGgcGGc -3'
miRNA:   3'- -CUGgCGCuCGAAGUg-CAgCCGCaaCC- -5'
19530 5' -55.7 NC_004685.1 + 35324 0.67 0.719713
Target:  5'- aGCCGCaGGCUUCGgCGggaUCGGC-UUGGc -3'
miRNA:   3'- cUGGCGcUCGAAGU-GC---AGCCGcAACC- -5'
19530 5' -55.7 NC_004685.1 + 29066 0.67 0.719713
Target:  5'- cGACCGUGcugaccGCUggCGCGgCGGCGUUcGGc -3'
miRNA:   3'- -CUGGCGCu-----CGAa-GUGCaGCCGCAA-CC- -5'
19530 5' -55.7 NC_004685.1 + 14781 0.67 0.715561
Target:  5'- aGGCCGCuGGGCUgaUCGUGUCGGaucgguacaagaaGUUGGc -3'
miRNA:   3'- -CUGGCG-CUCGA--AGUGCAGCCg------------CAACC- -5'
19530 5' -55.7 NC_004685.1 + 53369 0.67 0.709312
Target:  5'- uGGCCGCGGcgauGCUggccagCuCGUCGGCGgugaGGa -3'
miRNA:   3'- -CUGGCGCU----CGAa-----GuGCAGCCGCaa--CC- -5'
19530 5' -55.7 NC_004685.1 + 17138 0.67 0.695686
Target:  5'- cGGCCGCugGAGUUccggcugaaccugaUgGCGUCGGCGUUc- -3'
miRNA:   3'- -CUGGCG--CUCGA--------------AgUGCAGCCGCAAcc -5'
19530 5' -55.7 NC_004685.1 + 17213 0.69 0.613699
Target:  5'- gGGCUGCGAGCagCACGagcagCGcGCGUggcgGGa -3'
miRNA:   3'- -CUGGCGCUCGaaGUGCa----GC-CGCAa---CC- -5'
19530 5' -55.7 NC_004685.1 + 10536 0.69 0.612631
Target:  5'- cGCCGCGgccggguGGCUUCgacaACGUgGGCGggcUGGa -3'
miRNA:   3'- cUGGCGC-------UCGAAG----UGCAgCCGCa--ACC- -5'
19530 5' -55.7 NC_004685.1 + 42791 0.69 0.581768
Target:  5'- cACCGCGAGCU---CGUUGGCGa--- -3'
miRNA:   3'- cUGGCGCUCGAaguGCAGCCGCaacc -5'
19530 5' -55.7 NC_004685.1 + 13850 0.69 0.578591
Target:  5'- gGGCgGCGAGCUgaugCACGUCgaccccaaugagcuGGUGcUGGa -3'
miRNA:   3'- -CUGgCGCUCGAa---GUGCAG--------------CCGCaACC- -5'
19530 5' -55.7 NC_004685.1 + 28483 0.7 0.571193
Target:  5'- cGGCgGCGAGgUUCACGguguaaucgUCGGCGUc-- -3'
miRNA:   3'- -CUGgCGCUCgAAGUGC---------AGCCGCAacc -5'
19530 5' -55.7 NC_004685.1 + 4635 0.7 0.560665
Target:  5'- cGACCGCGAGauggUCGCcuaCGGCGUcgaGGa -3'
miRNA:   3'- -CUGGCGCUCga--AGUGca-GCCGCAa--CC- -5'
19530 5' -55.7 NC_004685.1 + 66915 0.7 0.550191
Target:  5'- --gUGCGGGUgggucacggUCACGUCaGCGUUGGu -3'
miRNA:   3'- cugGCGCUCGa--------AGUGCAGcCGCAACC- -5'
19530 5' -55.7 NC_004685.1 + 54908 0.71 0.478924
Target:  5'- cGCCGCG-GC--CACGUCGGC-UUGGc -3'
miRNA:   3'- cUGGCGCuCGaaGUGCAGCCGcAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.