miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19531 5' -54.9 NC_004685.1 + 32760 0.66 0.822194
Target:  5'- gGCCGCcagguuGGUGGCGaaacccucgGugUUCUGCCCg -3'
miRNA:   3'- -UGGCGu-----CUACUGCaa-------CugGAGGUGGG- -5'
19531 5' -54.9 NC_004685.1 + 26456 0.66 0.81308
Target:  5'- gACCgGCGuGGUGcUGcccGCCUCCACCCa -3'
miRNA:   3'- -UGG-CGU-CUACuGCaacUGGAGGUGGG- -5'
19531 5' -54.9 NC_004685.1 + 8279 0.66 0.803782
Target:  5'- uACCGgAGGacaccgaGUUGACCUCCACg- -3'
miRNA:   3'- -UGGCgUCUacug---CAACUGGAGGUGgg -5'
19531 5' -54.9 NC_004685.1 + 34047 0.66 0.803782
Target:  5'- gACCGCcGAUGAUGU--GCUgCCAgCCCu -3'
miRNA:   3'- -UGGCGuCUACUGCAacUGGaGGU-GGG- -5'
19531 5' -54.9 NC_004685.1 + 64092 0.66 0.794311
Target:  5'- cCCGCAGGucUGGuCGggGuCaUCCGCCCa -3'
miRNA:   3'- uGGCGUCU--ACU-GCaaCuGgAGGUGGG- -5'
19531 5' -54.9 NC_004685.1 + 5563 0.66 0.794311
Target:  5'- -gCGCAaGAcGGCGUUcGCCUCCAUgCa -3'
miRNA:   3'- ugGCGU-CUaCUGCAAcUGGAGGUGgG- -5'
19531 5' -54.9 NC_004685.1 + 48922 0.66 0.794311
Target:  5'- aGCCGCAuccu-CGUcGGCUUCCGCCUc -3'
miRNA:   3'- -UGGCGUcuacuGCAaCUGGAGGUGGG- -5'
19531 5' -54.9 NC_004685.1 + 60036 0.66 0.794311
Target:  5'- gAUCGgGGGUGGCGUcgcccuucggggUGGCCcgguuguagcacUCCACCa -3'
miRNA:   3'- -UGGCgUCUACUGCA------------ACUGG------------AGGUGGg -5'
19531 5' -54.9 NC_004685.1 + 30896 0.66 0.794311
Target:  5'- gACCGCGGAUGG---UGugCgaaCCGCCg -3'
miRNA:   3'- -UGGCGUCUACUgcaACugGa--GGUGGg -5'
19531 5' -54.9 NC_004685.1 + 49337 0.66 0.784676
Target:  5'- cGCCGCGGcgGGCagcgGUUcGCCgCCGCCg -3'
miRNA:   3'- -UGGCGUCuaCUG----CAAcUGGaGGUGGg -5'
19531 5' -54.9 NC_004685.1 + 19733 0.66 0.784676
Target:  5'- uACCGCuccgAGAUGugGUcgGAggUgUUCACCCg -3'
miRNA:   3'- -UGGCG----UCUACugCAa-CU--GgAGGUGGG- -5'
19531 5' -54.9 NC_004685.1 + 25628 0.66 0.784676
Target:  5'- gACCGCAGGucgcgguugguUGGCGUggucauggcagGGCCUCCuuCUu -3'
miRNA:   3'- -UGGCGUCU-----------ACUGCAa----------CUGGAGGugGG- -5'
19531 5' -54.9 NC_004685.1 + 11017 0.66 0.783704
Target:  5'- gGCCGCuucgaugAGGUGugGUgGAUCgaCCugCCg -3'
miRNA:   3'- -UGGCG-------UCUACugCAaCUGGa-GGugGG- -5'
19531 5' -54.9 NC_004685.1 + 59741 0.67 0.774889
Target:  5'- cGCCGCGGAUGGCGgugccgucgauuUUGAgCg-CGCCg -3'
miRNA:   3'- -UGGCGUCUACUGC------------AACUgGagGUGGg -5'
19531 5' -54.9 NC_004685.1 + 49458 0.67 0.774889
Target:  5'- gACCGCAGAUG-Caa-GACCUCaugaaCGCCUc -3'
miRNA:   3'- -UGGCGUCUACuGcaaCUGGAG-----GUGGG- -5'
19531 5' -54.9 NC_004685.1 + 22702 0.67 0.774889
Target:  5'- cACCGCGGucGGCGUggacgaGGCCaCCGCCg -3'
miRNA:   3'- -UGGCGUCuaCUGCAa-----CUGGaGGUGGg -5'
19531 5' -54.9 NC_004685.1 + 64221 0.67 0.754899
Target:  5'- aACCGCgccGGAUGACccgcgccGGCCcgcagauacaggUCCACCCu -3'
miRNA:   3'- -UGGCG---UCUACUGcaa----CUGG------------AGGUGGG- -5'
19531 5' -54.9 NC_004685.1 + 8857 0.67 0.754899
Target:  5'- cACCGCGGGUGAccCGUcgccgcUGGugUCgGCCCg -3'
miRNA:   3'- -UGGCGUCUACU--GCA------ACUggAGgUGGG- -5'
19531 5' -54.9 NC_004685.1 + 68507 0.67 0.745741
Target:  5'- uCUGCAGAgcugGACGacugccgcugcacgaUGGCCgagggCCACCCu -3'
miRNA:   3'- uGGCGUCUa---CUGCa--------------ACUGGa----GGUGGG- -5'
19531 5' -54.9 NC_004685.1 + 61735 0.67 0.744717
Target:  5'- cUCGCAGAUGGCcUUGGCUcggUCCAgCg -3'
miRNA:   3'- uGGCGUCUACUGcAACUGG---AGGUgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.