miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19532 3' -61.4 NC_004685.1 + 36369 0.66 0.439076
Target:  5'- aUCgCGgUCGccGCGCCCGACggcgGCCUGgGCAa -3'
miRNA:   3'- aAG-GUgAGC--CGCGGGUUG----CGGAC-CGU- -5'
19532 3' -61.4 NC_004685.1 + 37675 0.66 0.439076
Target:  5'- gUCCAC-CGGCGggaCCAGCGgCUccGGCu -3'
miRNA:   3'- aAGGUGaGCCGCg--GGUUGCgGA--CCGu -5'
19532 3' -61.4 NC_004685.1 + 11972 0.66 0.439076
Target:  5'- gUCCggcggcguGCUCgaaGGCGCUCGACGUggGGCAg -3'
miRNA:   3'- aAGG--------UGAG---CCGCGGGUUGCGgaCCGU- -5'
19532 3' -61.4 NC_004685.1 + 57596 0.66 0.439076
Target:  5'- --gCACUCGGCGgU--GCGCUUGGCc -3'
miRNA:   3'- aagGUGAGCCGCgGguUGCGGACCGu -5'
19532 3' -61.4 NC_004685.1 + 13310 0.66 0.429806
Target:  5'- gUCCAC-CGGCGUugCCGcCGCCgcggagucUGGCGa -3'
miRNA:   3'- aAGGUGaGCCGCG--GGUuGCGG--------ACCGU- -5'
19532 3' -61.4 NC_004685.1 + 11112 0.66 0.428885
Target:  5'- aUCgUGCUUGGCGCgauagguUCAACGCCcggUGGCAc -3'
miRNA:   3'- aAG-GUGAGCCGCG-------GGUUGCGG---ACCGU- -5'
19532 3' -61.4 NC_004685.1 + 37617 0.66 0.420652
Target:  5'- -gCCGCUCGGCGCguuccCCAGCgauucgGUCgcgGGCGg -3'
miRNA:   3'- aaGGUGAGCCGCG-----GGUUG------CGGa--CCGU- -5'
19532 3' -61.4 NC_004685.1 + 58568 0.66 0.420652
Target:  5'- -aCCGCgcccaGGUcgauGCCCAACGUCUcGGCGu -3'
miRNA:   3'- aaGGUGag---CCG----CGGGUUGCGGA-CCGU- -5'
19532 3' -61.4 NC_004685.1 + 52695 0.66 0.420652
Target:  5'- gUCCAUgcagCGGCaggucuGCCCAcccuCGCCggccgGGCAg -3'
miRNA:   3'- aAGGUGa---GCCG------CGGGUu---GCGGa----CCGU- -5'
19532 3' -61.4 NC_004685.1 + 53313 0.66 0.419743
Target:  5'- cUCCAucaggcugaggucCUgGGCGCUCAucgacuuCGCCUGGUu -3'
miRNA:   3'- aAGGU-------------GAgCCGCGGGUu------GCGGACCGu -5'
19532 3' -61.4 NC_004685.1 + 61202 0.66 0.411616
Target:  5'- -cCCAC-CGGCGCUCA--GCCUcGGCc -3'
miRNA:   3'- aaGGUGaGCCGCGGGUugCGGA-CCGu -5'
19532 3' -61.4 NC_004685.1 + 7037 0.66 0.411616
Target:  5'- gUCUGCUCGccGCGCUgcgCAACGCCagGGCc -3'
miRNA:   3'- aAGGUGAGC--CGCGG---GUUGCGGa-CCGu -5'
19532 3' -61.4 NC_004685.1 + 32470 0.66 0.393911
Target:  5'- aUCgGCgCGGC-CCCGGCGCugcccaacCUGGCAg -3'
miRNA:   3'- aAGgUGaGCCGcGGGUUGCG--------GACCGU- -5'
19532 3' -61.4 NC_004685.1 + 60718 0.67 0.388697
Target:  5'- -aCC-CUCGGCGCCCAuccgcaggaucgccaGCacauGCCgcaGGCAg -3'
miRNA:   3'- aaGGuGAGCCGCGGGU---------------UG----CGGa--CCGU- -5'
19532 3' -61.4 NC_004685.1 + 55487 0.67 0.385246
Target:  5'- -gCCGCUUGGCGaccuuggucaCCGACaGCCcGGCGu -3'
miRNA:   3'- aaGGUGAGCCGCg---------GGUUG-CGGaCCGU- -5'
19532 3' -61.4 NC_004685.1 + 22861 0.67 0.376707
Target:  5'- -aCCGaggugUCGGCGCCCGGCuGCCgacaucGGCc -3'
miRNA:   3'- aaGGUg----AGCCGCGGGUUG-CGGa-----CCGu -5'
19532 3' -61.4 NC_004685.1 + 26858 0.67 0.376707
Target:  5'- -gCCGCUCaGCGCaaaCAggGCGaCCUGGCc -3'
miRNA:   3'- aaGGUGAGcCGCGg--GU--UGC-GGACCGu -5'
19532 3' -61.4 NC_004685.1 + 65282 0.67 0.376707
Target:  5'- aUCCGCgCGGCGaCCGGCGacuacaaggCUGGCGg -3'
miRNA:   3'- aAGGUGaGCCGCgGGUUGCg--------GACCGU- -5'
19532 3' -61.4 NC_004685.1 + 39829 0.67 0.37417
Target:  5'- aUCCGCUgccggccgacaucaCGGCGgCCAucgACGCgCUGGUg -3'
miRNA:   3'- aAGGUGA--------------GCCGCgGGU---UGCG-GACCGu -5'
19532 3' -61.4 NC_004685.1 + 26602 0.67 0.368297
Target:  5'- -gCgGCaagUCGGCGgCCGACGUgUGGCGc -3'
miRNA:   3'- aaGgUG---AGCCGCgGGUUGCGgACCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.