miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19532 5' -58.6 NC_004685.1 + 67942 0.66 0.593404
Target:  5'- ---cUGCCAucGCCCGcGGACGCCGcgGc -3'
miRNA:   3'- aaacGCGGU--CGGGC-UCUGCGGCuaCu -5'
19532 5' -58.6 NC_004685.1 + 63274 0.66 0.593404
Target:  5'- --gGCGCC-GCCgGAGAagaaucCGCCGAg-- -3'
miRNA:   3'- aaaCGCGGuCGGgCUCU------GCGGCUacu -5'
19532 5' -58.6 NC_004685.1 + 19351 0.66 0.593404
Target:  5'- -aUGCGCCgcggcgaagucGGCCCcGGcagccCGCUGAUGAa -3'
miRNA:   3'- aaACGCGG-----------UCGGGcUCu----GCGGCUACU- -5'
19532 5' -58.6 NC_004685.1 + 4784 0.66 0.593404
Target:  5'- -cUGUGCCcGCacuuCGAGcacGCGCCGAUGc -3'
miRNA:   3'- aaACGCGGuCGg---GCUC---UGCGGCUACu -5'
19532 5' -58.6 NC_004685.1 + 66925 0.66 0.572132
Target:  5'- --cGCGCCGcggcaccguGCCCGAcgaGACGCUGGc-- -3'
miRNA:   3'- aaaCGCGGU---------CGGGCU---CUGCGGCUacu -5'
19532 5' -58.6 NC_004685.1 + 39212 0.66 0.572132
Target:  5'- --cGCGCC-GCCUGGcggcggcuucGGCGCCGGcUGGg -3'
miRNA:   3'- aaaCGCGGuCGGGCU----------CUGCGGCU-ACU- -5'
19532 5' -58.6 NC_004685.1 + 36563 0.66 0.551047
Target:  5'- --cGCGCCcggcgacgcgGGUCCGAucaaccuggccGACGCCGAgGAc -3'
miRNA:   3'- aaaCGCGG----------UCGGGCU-----------CUGCGGCUaCU- -5'
19532 5' -58.6 NC_004685.1 + 17825 0.66 0.551047
Target:  5'- -cUGCugGCCGGCCUGAa--GUCGGUGAg -3'
miRNA:   3'- aaACG--CGGUCGGGCUcugCGGCUACU- -5'
19532 5' -58.6 NC_004685.1 + 35780 0.66 0.551047
Target:  5'- --aGCGCCGguGCCCGAcuccAUGCCGAa-- -3'
miRNA:   3'- aaaCGCGGU--CGGGCUc---UGCGGCUacu -5'
19532 5' -58.6 NC_004685.1 + 59733 0.66 0.551047
Target:  5'- ----gGCCAGCCCGGcACGUccuCGGUGAu -3'
miRNA:   3'- aaacgCGGUCGGGCUcUGCG---GCUACU- -5'
19532 5' -58.6 NC_004685.1 + 11734 0.66 0.551047
Target:  5'- --cGCGCaCGGCCCGcuGUGCcCGAUGGa -3'
miRNA:   3'- aaaCGCG-GUCGGGCucUGCG-GCUACU- -5'
19532 5' -58.6 NC_004685.1 + 10055 0.66 0.549998
Target:  5'- -gUGCGUgGuGCCCGAGGaggcgguCGCCGA-GAu -3'
miRNA:   3'- aaACGCGgU-CGGGCUCU-------GCGGCUaCU- -5'
19532 5' -58.6 NC_004685.1 + 30090 0.66 0.549998
Target:  5'- --cGCGCC-GCgCCGAucgcaacGuACGCCGGUGGg -3'
miRNA:   3'- aaaCGCGGuCG-GGCU-------C-UGCGGCUACU- -5'
19532 5' -58.6 NC_004685.1 + 21540 0.66 0.540592
Target:  5'- --cGgGCCAGCCgGGGuggUGCCGGcaUGAg -3'
miRNA:   3'- aaaCgCGGUCGGgCUCu--GCGGCU--ACU- -5'
19532 5' -58.6 NC_004685.1 + 58311 0.66 0.537468
Target:  5'- --cGCGCCAGCCuccggCGAGuggucaccagcccuGCGCCcacgcGAUGAu -3'
miRNA:   3'- aaaCGCGGUCGG-----GCUC--------------UGCGG-----CUACU- -5'
19532 5' -58.6 NC_004685.1 + 63988 0.67 0.530204
Target:  5'- -cUGCGCCGaCCCGu--CGCCGAUc- -3'
miRNA:   3'- aaACGCGGUcGGGCucuGCGGCUAcu -5'
19532 5' -58.6 NC_004685.1 + 30200 0.67 0.519891
Target:  5'- --cGCGCUcgucGGCCUG-GGCGCCGcgGc -3'
miRNA:   3'- aaaCGCGG----UCGGGCuCUGCGGCuaCu -5'
19532 5' -58.6 NC_004685.1 + 64937 0.67 0.519891
Target:  5'- --cGCGCCGaCCaCGAGcGCGCCGAc-- -3'
miRNA:   3'- aaaCGCGGUcGG-GCUC-UGCGGCUacu -5'
19532 5' -58.6 NC_004685.1 + 66850 0.67 0.519891
Target:  5'- gUUG-GCCGGCCCGcAGAgcgguugcCGUCGAUGc -3'
miRNA:   3'- aAACgCGGUCGGGC-UCU--------GCGGCUACu -5'
19532 5' -58.6 NC_004685.1 + 33175 0.67 0.519891
Target:  5'- --gGCaCCGGCCgGugguGGGCGCCGGUGc -3'
miRNA:   3'- aaaCGcGGUCGGgC----UCUGCGGCUACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.