miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19533 3' -56.1 NC_004685.1 + 64495 0.66 0.735907
Target:  5'- cGAGCGCguuGCGCUUCugCGGCUu- -3'
miRNA:   3'- aCUCGUGagcCGCGAAGuaGCCGAcg -5'
19533 3' -56.1 NC_004685.1 + 19129 0.66 0.735907
Target:  5'- -cGGCGC-CGGCGCc-CAUCGugucGCUGUa -3'
miRNA:   3'- acUCGUGaGCCGCGaaGUAGC----CGACG- -5'
19533 3' -56.1 NC_004685.1 + 15727 0.66 0.731753
Target:  5'- cGAGUugggGCUCGGCGCaggacaaGCUGCg -3'
miRNA:   3'- aCUCG----UGAGCCGCGaaguagcCGACG- -5'
19533 3' -56.1 NC_004685.1 + 58110 0.66 0.725493
Target:  5'- aGGGCGUUCGauuucGCGCUUCugguaggcgCGGUUGCc -3'
miRNA:   3'- aCUCGUGAGC-----CGCGAAGua-------GCCGACG- -5'
19533 3' -56.1 NC_004685.1 + 47538 0.66 0.725493
Target:  5'- gUGAGCGCgCGGUGCcagg-UGGCggGCa -3'
miRNA:   3'- -ACUCGUGaGCCGCGaaguaGCCGa-CG- -5'
19533 3' -56.1 NC_004685.1 + 40938 0.66 0.725493
Target:  5'- gGAGgAUUCGGUGCUgucgCcgUGGauuCUGCg -3'
miRNA:   3'- aCUCgUGAGCCGCGAa---GuaGCC---GACG- -5'
19533 3' -56.1 NC_004685.1 + 2121 0.66 0.725493
Target:  5'- cGAGCGugaGGCGCUgcgcaaagagcUgGUCGaGCUGCc -3'
miRNA:   3'- aCUCGUgagCCGCGA-----------AgUAGC-CGACG- -5'
19533 3' -56.1 NC_004685.1 + 10653 0.66 0.725493
Target:  5'- aGGGUGCgaugcucaUCGGCGUcUCG--GGCUGCg -3'
miRNA:   3'- aCUCGUG--------AGCCGCGaAGUagCCGACG- -5'
19533 3' -56.1 NC_004685.1 + 3663 0.66 0.714988
Target:  5'- uUGAGC-CU-GGCccGCUUC-UCGGCgGCu -3'
miRNA:   3'- -ACUCGuGAgCCG--CGAAGuAGCCGaCG- -5'
19533 3' -56.1 NC_004685.1 + 21662 0.66 0.714988
Target:  5'- cGAGCcUUCGGUGU----UCGGuCUGCa -3'
miRNA:   3'- aCUCGuGAGCCGCGaaguAGCC-GACG- -5'
19533 3' -56.1 NC_004685.1 + 57248 0.66 0.714988
Target:  5'- cGGGCGCUCGGCgGCgggcggUCA-CaGCcGCu -3'
miRNA:   3'- aCUCGUGAGCCG-CGa-----AGUaGcCGaCG- -5'
19533 3' -56.1 NC_004685.1 + 37614 0.66 0.714988
Target:  5'- gUGGcCGCUCGGCGCgUUCcccagcgauUCGGUcGCg -3'
miRNA:   3'- -ACUcGUGAGCCGCG-AAGu--------AGCCGaCG- -5'
19533 3' -56.1 NC_004685.1 + 65983 0.66 0.711821
Target:  5'- --cGUACUCGGCGCgauaCAcccgcgccgagccgUCGGCgucGCg -3'
miRNA:   3'- acuCGUGAGCCGCGaa--GU--------------AGCCGa--CG- -5'
19533 3' -56.1 NC_004685.1 + 20105 0.66 0.711821
Target:  5'- aGGGCGCgcgGGUGCUggCGaugcgcggcgaggaUCGGUUGCu -3'
miRNA:   3'- aCUCGUGag-CCGCGAa-GU--------------AGCCGACG- -5'
19533 3' -56.1 NC_004685.1 + 14395 0.66 0.704404
Target:  5'- cGAGCACgagcugcagCGGCag--CGUCaGCUGCg -3'
miRNA:   3'- aCUCGUGa--------GCCGcgaaGUAGcCGACG- -5'
19533 3' -56.1 NC_004685.1 + 7802 0.66 0.704404
Target:  5'- -uGGCACUCGGgGCcggUCAaCgGGgUGCg -3'
miRNA:   3'- acUCGUGAGCCgCGa--AGUaG-CCgACG- -5'
19533 3' -56.1 NC_004685.1 + 22871 0.66 0.704404
Target:  5'- -cGGCGCcCGGCuGCcgaCAUCGGCcGCu -3'
miRNA:   3'- acUCGUGaGCCG-CGaa-GUAGCCGaCG- -5'
19533 3' -56.1 NC_004685.1 + 62530 0.66 0.704404
Target:  5'- -cGGUACUUGGUGUcaUAUCGGCagGCc -3'
miRNA:   3'- acUCGUGAGCCGCGaaGUAGCCGa-CG- -5'
19533 3' -56.1 NC_004685.1 + 30686 0.66 0.701216
Target:  5'- cGAGCuggacaagauuccuaUCGGCGCgu--UCGGCgGCg -3'
miRNA:   3'- aCUCGug-------------AGCCGCGaaguAGCCGaCG- -5'
19533 3' -56.1 NC_004685.1 + 21311 0.67 0.683042
Target:  5'- -cAGCACcuccacCGGCGCU--GUCGGCUacgGCa -3'
miRNA:   3'- acUCGUGa-----GCCGCGAagUAGCCGA---CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.