miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19533 5' -61.1 NC_004685.1 + 59057 0.66 0.520187
Target:  5'- uGGGCAGCuucAgGUUGuaggcCCGCGCCuccGGugAg -3'
miRNA:   3'- -CCCGUCG---UgCAGCu----GGCGCGG---CCugU- -5'
19533 5' -61.1 NC_004685.1 + 32292 0.66 0.520187
Target:  5'- uGGUGGCGCGgCGACCGCagcgGCCcuGCAg -3'
miRNA:   3'- cCCGUCGUGCaGCUGGCG----CGGccUGU- -5'
19533 5' -61.1 NC_004685.1 + 58351 0.66 0.520187
Target:  5'- gGGGCGGguCGcCGGUCGCGCaCGGcCc -3'
miRNA:   3'- -CCCGUCguGCaGCUGGCGCG-GCCuGu -5'
19533 5' -61.1 NC_004685.1 + 45930 0.66 0.520187
Target:  5'- cGGGCAGCguACG-CGAa--CGCCGGAg- -3'
miRNA:   3'- -CCCGUCG--UGCaGCUggcGCGGCCUgu -5'
19533 5' -61.1 NC_004685.1 + 43065 0.66 0.51722
Target:  5'- uGGCuGCcccagaugcgccacACGUCGGCCGCcgacuugccGCCGGcgcGCAg -3'
miRNA:   3'- cCCGuCG--------------UGCAGCUGGCG---------CGGCC---UGU- -5'
19533 5' -61.1 NC_004685.1 + 46812 0.66 0.510325
Target:  5'- -aGCGGCcgAUGUCGGCa--GCCGGGCGc -3'
miRNA:   3'- ccCGUCG--UGCAGCUGgcgCGGCCUGU- -5'
19533 5' -61.1 NC_004685.1 + 27914 0.66 0.510325
Target:  5'- -uGCuGCGuCGcUCGACCGCGCCGu-CAa -3'
miRNA:   3'- ccCGuCGU-GC-AGCUGGCGCGGCcuGU- -5'
19533 5' -61.1 NC_004685.1 + 32901 0.66 0.510325
Target:  5'- uGGGCGGCA---UGGCgGUGCCcGACAa -3'
miRNA:   3'- -CCCGUCGUgcaGCUGgCGCGGcCUGU- -5'
19533 5' -61.1 NC_004685.1 + 3366 0.66 0.510325
Target:  5'- cGGGCGGgCGgGUCGAgUcgguaguucaGCGCgCGGACc -3'
miRNA:   3'- -CCCGUC-GUgCAGCUgG----------CGCG-GCCUGu -5'
19533 5' -61.1 NC_004685.1 + 60106 0.66 0.506402
Target:  5'- gGGGCAGgagaaCACGUCGuuggggaucagguCgCGCGCCGuGGCc -3'
miRNA:   3'- -CCCGUC-----GUGCAGCu------------G-GCGCGGC-CUGu -5'
19533 5' -61.1 NC_004685.1 + 11359 0.66 0.500542
Target:  5'- uGGGCgcagGGCugGU-GACCacuCGCCGGAg- -3'
miRNA:   3'- -CCCG----UCGugCAgCUGGc--GCGGCCUgu -5'
19533 5' -61.1 NC_004685.1 + 57081 0.66 0.500542
Target:  5'- cGGCcuugcGCACcUCGGCgGCGCguuCGGACAc -3'
miRNA:   3'- cCCGu----CGUGcAGCUGgCGCG---GCCUGU- -5'
19533 5' -61.1 NC_004685.1 + 21204 0.66 0.497623
Target:  5'- cGGCAG-GCGaUCGACUucuccucgccgucgGCGCUGGACc -3'
miRNA:   3'- cCCGUCgUGC-AGCUGG--------------CGCGGCCUGu -5'
19533 5' -61.1 NC_004685.1 + 61850 0.66 0.490842
Target:  5'- cGGguGCGCaGUCGGCUGUaGCagCGGACc -3'
miRNA:   3'- cCCguCGUG-CAGCUGGCG-CG--GCCUGu -5'
19533 5' -61.1 NC_004685.1 + 64930 0.66 0.490842
Target:  5'- cGGcCAGCGCGcCGACCacgagcGCGCC-GACc -3'
miRNA:   3'- cCC-GUCGUGCaGCUGG------CGCGGcCUGu -5'
19533 5' -61.1 NC_004685.1 + 3229 0.66 0.490842
Target:  5'- gGGGCGGg--GUCGGggUCGgGCCGGACc -3'
miRNA:   3'- -CCCGUCgugCAGCU--GGCgCGGCCUGu -5'
19533 5' -61.1 NC_004685.1 + 11056 0.66 0.490842
Target:  5'- cGGGCcgaacGCAUGUCGgugGCCGCGgC-GACAc -3'
miRNA:   3'- -CCCGu----CGUGCAGC---UGGCGCgGcCUGU- -5'
19533 5' -61.1 NC_004685.1 + 69137 0.66 0.490842
Target:  5'- -aGUGGUGCGUCGAcacCCGCGCgcugcuggCGGGCGa -3'
miRNA:   3'- ccCGUCGUGCAGCU---GGCGCG--------GCCUGU- -5'
19533 5' -61.1 NC_004685.1 + 57921 0.66 0.490842
Target:  5'- uGGGCGGCcCGcCGuCCuuGCCGGGa- -3'
miRNA:   3'- -CCCGUCGuGCaGCuGGcgCGGCCUgu -5'
19533 5' -61.1 NC_004685.1 + 32807 0.66 0.489877
Target:  5'- -cGCGGC-CG-CGGCCGacgauguUGCCGGACGc -3'
miRNA:   3'- ccCGUCGuGCaGCUGGC-------GCGGCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.