miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19534 3' -54.1 NC_004685.1 + 59769 0.66 0.832956
Target:  5'- -cGGcCcgGGAACcacaugaaCCGcUGCGGGGUg -3'
miRNA:   3'- gaCCaGuaCCUUGa-------GGUaACGCCCCG- -5'
19534 3' -54.1 NC_004685.1 + 8259 0.67 0.791966
Target:  5'- -aGGUCuacUGGGACaaagggugGCGGGGCg -3'
miRNA:   3'- gaCCAGu--ACCUUGagguaa--CGCCCCG- -5'
19534 3' -54.1 NC_004685.1 + 25652 0.67 0.776224
Target:  5'- gUGGUCAUGGcagggcCUCCuucUUGCGcacGGCg -3'
miRNA:   3'- gACCAGUACCuu----GAGGu--AACGCc--CCG- -5'
19534 3' -54.1 NC_004685.1 + 59989 0.68 0.724812
Target:  5'- -cGGUCAUGGucuCUCUuucucucucucGUgggGUGGGGUg -3'
miRNA:   3'- gaCCAGUACCuu-GAGG-----------UAa--CGCCCCG- -5'
19534 3' -54.1 NC_004685.1 + 62481 0.68 0.724812
Target:  5'- gCUGGUCGggugacaGGAACgCCAcgGCcGGGCc -3'
miRNA:   3'- -GACCAGUa------CCUUGaGGUaaCGcCCCG- -5'
19534 3' -54.1 NC_004685.1 + 41798 0.69 0.638379
Target:  5'- uCUGGUCGUuGAGCUugaCCAgcuucgacGUGGGGCc -3'
miRNA:   3'- -GACCAGUAcCUUGA---GGUaa------CGCCCCG- -5'
19534 3' -54.1 NC_004685.1 + 42907 0.7 0.593603
Target:  5'- -aGGUaCAcGGAggaaacgccgguaGCUCCAUUGUGGuGGCc -3'
miRNA:   3'- gaCCA-GUaCCU-------------UGAGGUAACGCC-CCG- -5'
19534 3' -54.1 NC_004685.1 + 30491 0.71 0.530247
Target:  5'- -cGGcgCGUGGAGCguUCCGggguccuucaGCGGGGCg -3'
miRNA:   3'- gaCCa-GUACCUUG--AGGUaa--------CGCCCCG- -5'
19534 3' -54.1 NC_004685.1 + 63209 0.73 0.458592
Target:  5'- aUGGUUccGGuGACUCCGUUGCggccgccaGGGGUg -3'
miRNA:   3'- gACCAGuaCC-UUGAGGUAACG--------CCCCG- -5'
19534 3' -54.1 NC_004685.1 + 60120 1.12 0.000997
Target:  5'- uCUGGUCAUGGAACUCCAUUGCGGGGCg -3'
miRNA:   3'- -GACCAGUACCUUGAGGUAACGCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.