Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19534 | 5' | -53.3 | NC_004685.1 | + | 16133 | 0.66 | 0.847535 |
Target: 5'- cACGGUCC-CCUG-GAG-UCGGccgcgccgcGCCAGg -3' miRNA: 3'- -UGCUAGGcGGACuCUCaAGCU---------UGGUC- -5' |
|||||||
19534 | 5' | -53.3 | NC_004685.1 | + | 54794 | 0.68 | 0.782805 |
Target: 5'- cCGAUUCGCCgGAGGucaUGAACCGGg -3' miRNA: 3'- uGCUAGGCGGaCUCUcaaGCUUGGUC- -5' |
|||||||
19534 | 5' | -53.3 | NC_004685.1 | + | 16953 | 0.68 | 0.772854 |
Target: 5'- -gGGUCUGCCUGAGGcuggCG-GCCAGa -3' miRNA: 3'- ugCUAGGCGGACUCUcaa-GCuUGGUC- -5' |
|||||||
19534 | 5' | -53.3 | NC_004685.1 | + | 63228 | 0.72 | 0.526341 |
Target: 5'- uGCGG-CCGCCaGGGGugccgggcuGUUCGGGCCAGg -3' miRNA: 3'- -UGCUaGGCGGaCUCU---------CAAGCUUGGUC- -5' |
|||||||
19534 | 5' | -53.3 | NC_004685.1 | + | 60155 | 1.09 | 0.002116 |
Target: 5'- gACGAUCCGCCUGAGAGUUCGAACCAGa -3' miRNA: 3'- -UGCUAGGCGGACUCUCAAGCUUGGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home