miRNA display CGI


Results 1 - 20 of 356 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19536 3' -53.6 NC_004685.1 + 27388 0.66 0.895668
Target:  5'- --uUCGAguccuuCGAGCCGAGaCCAUCGUaggugGCCu -3'
miRNA:   3'- gguAGCU------GUUUGGCUC-GGUGGCG-----UGG- -5'
19536 3' -53.6 NC_004685.1 + 658 0.66 0.895668
Target:  5'- uCCAuuUCGGC-GGCCGGGUCGgCaGCGCg -3'
miRNA:   3'- -GGU--AGCUGuUUGGCUCGGUgG-CGUGg -5'
19536 3' -53.6 NC_004685.1 + 29181 0.66 0.895668
Target:  5'- -aAUCaACAAGCUGucGCCGgCCGCGCa -3'
miRNA:   3'- ggUAGcUGUUUGGCu-CGGU-GGCGUGg -5'
19536 3' -53.6 NC_004685.1 + 39029 0.66 0.895668
Target:  5'- gCCGggCGugGAcugccaaucgGCCGGGUCACCGggaauGCCg -3'
miRNA:   3'- -GGUa-GCugUU----------UGGCUCGGUGGCg----UGG- -5'
19536 3' -53.6 NC_004685.1 + 59757 0.66 0.895668
Target:  5'- gCCGUCGAUu--UUGAGCgCGCCGUugGCg -3'
miRNA:   3'- -GGUAGCUGuuuGGCUCG-GUGGCG--UGg -5'
19536 3' -53.6 NC_004685.1 + 57821 0.66 0.894278
Target:  5'- --cUCGACAAucgccucGCCGAGCaggucggcggucgCGCC-CACCa -3'
miRNA:   3'- gguAGCUGUU-------UGGCUCG-------------GUGGcGUGG- -5'
19536 3' -53.6 NC_004685.1 + 44927 0.66 0.89358
Target:  5'- uCC-UCGAC-GAUCGAGUUGCCGUcggaguccgacaggGCCa -3'
miRNA:   3'- -GGuAGCUGuUUGGCUCGGUGGCG--------------UGG- -5'
19536 3' -53.6 NC_004685.1 + 38720 0.66 0.891469
Target:  5'- gCAUCGACuccauccaGGACCGcucAGCCugaaugacgucguacGCCGC-CCg -3'
miRNA:   3'- gGUAGCUG--------UUUGGC---UCGG---------------UGGCGuGG- -5'
19536 3' -53.6 NC_004685.1 + 34570 0.66 0.888619
Target:  5'- uCCGaUGACcgcGGCCGAcGCUGCCgaGCGCCu -3'
miRNA:   3'- -GGUaGCUGu--UUGGCU-CGGUGG--CGUGG- -5'
19536 3' -53.6 NC_004685.1 + 13616 0.66 0.888619
Target:  5'- gCCGUCGcaaccGCAAGCUGuccgaGGUCACCcGaCGCCu -3'
miRNA:   3'- -GGUAGC-----UGUUUGGC-----UCGGUGG-C-GUGG- -5'
19536 3' -53.6 NC_004685.1 + 6768 0.66 0.888619
Target:  5'- gCCGUCGaaGCAcuUCGcGGCCACCuaCACCc -3'
miRNA:   3'- -GGUAGC--UGUuuGGC-UCGGUGGc-GUGG- -5'
19536 3' -53.6 NC_004685.1 + 11407 0.66 0.888619
Target:  5'- gCCGgguuUCGGCGguGGCC--GCCGCUGUGCCu -3'
miRNA:   3'- -GGU----AGCUGU--UUGGcuCGGUGGCGUGG- -5'
19536 3' -53.6 NC_004685.1 + 34348 0.66 0.888619
Target:  5'- gCCGguUCGcCAAGCCGAucCCGCCGaaGCCu -3'
miRNA:   3'- -GGU--AGCuGUUUGGCUc-GGUGGCg-UGG- -5'
19536 3' -53.6 NC_004685.1 + 12431 0.66 0.888619
Target:  5'- ---gCGGCuguGACCGcccGCCGCCgaGCGCCc -3'
miRNA:   3'- gguaGCUGu--UUGGCu--CGGUGG--CGUGG- -5'
19536 3' -53.6 NC_004685.1 + 69061 0.66 0.888619
Target:  5'- uCCGUCGAaucCAAcauCCG-GCUACgggugCGCGCCg -3'
miRNA:   3'- -GGUAGCU---GUUu--GGCuCGGUG-----GCGUGG- -5'
19536 3' -53.6 NC_004685.1 + 60254 0.66 0.884268
Target:  5'- aCCAgCGACAAcGCgCGGGCgacaacgcaagcgaaCACCGC-CCa -3'
miRNA:   3'- -GGUaGCUGUU-UG-GCUCG---------------GUGGCGuGG- -5'
19536 3' -53.6 NC_004685.1 + 53743 0.66 0.883535
Target:  5'- gCCAUUGGCAGcacgaacgcuucGCCGAGCUggaagucccagaacaGCUGCuuggcgaacuccuGCCa -3'
miRNA:   3'- -GGUAGCUGUU------------UGGCUCGG---------------UGGCG-------------UGG- -5'
19536 3' -53.6 NC_004685.1 + 6468 0.66 0.881318
Target:  5'- cCCuggCGGCcgcAACgGAGUCACCGgaACCa -3'
miRNA:   3'- -GGua-GCUGu--UUGgCUCGGUGGCg-UGG- -5'
19536 3' -53.6 NC_004685.1 + 39497 0.66 0.881318
Target:  5'- gUCAUCaGCGAGCCGGacgaCGCCcCACCg -3'
miRNA:   3'- -GGUAGcUGUUUGGCUcg--GUGGcGUGG- -5'
19536 3' -53.6 NC_004685.1 + 21489 0.66 0.881318
Target:  5'- aCCAacgcgcauUCGACGGGCuuCGAgGCCGgCCGCuucgGCCa -3'
miRNA:   3'- -GGU--------AGCUGUUUG--GCU-CGGU-GGCG----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.