miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19536 5' -62.2 NC_004685.1 + 52289 0.66 0.490299
Target:  5'- uGGcGUCGACCAgGUAGaugguccccaGCCGgacGCCGu -3'
miRNA:   3'- gCC-CAGCUGGUgCGUC----------CGGCa--CGGCc -5'
19536 5' -62.2 NC_004685.1 + 19396 0.66 0.490299
Target:  5'- -uGGUCGAUCACGacgaCGGGCCaaGCCuGGu -3'
miRNA:   3'- gcCCAGCUGGUGC----GUCCGGcaCGG-CC- -5'
19536 5' -62.2 NC_004685.1 + 38888 0.66 0.490299
Target:  5'- aCGGGUCaacguuCCACGCGcccGGCU-UGCCGa -3'
miRNA:   3'- -GCCCAGcu----GGUGCGU---CCGGcACGGCc -5'
19536 5' -62.2 NC_004685.1 + 59719 0.66 0.487448
Target:  5'- uCGGGUgCGgcguaguccacgucGCCGCGgAuGGCgGUGCCGu -3'
miRNA:   3'- -GCCCA-GC--------------UGGUGCgU-CCGgCACGGCc -5'
19536 5' -62.2 NC_004685.1 + 48041 0.66 0.480827
Target:  5'- aGGcUCGACCACcuGCAGG--GUGCCGa -3'
miRNA:   3'- gCCcAGCUGGUG--CGUCCggCACGGCc -5'
19536 5' -62.2 NC_004685.1 + 30705 0.66 0.480827
Target:  5'- gGGGUCGcgguaCGCGCc-GCCGUcGCCGa -3'
miRNA:   3'- gCCCAGCug---GUGCGucCGGCA-CGGCc -5'
19536 5' -62.2 NC_004685.1 + 32128 0.66 0.471445
Target:  5'- cCGGGUggCGcACCGacacCGCuGGgCGUGCCGa -3'
miRNA:   3'- -GCCCA--GC-UGGU----GCGuCCgGCACGGCc -5'
19536 5' -62.2 NC_004685.1 + 25691 0.66 0.471445
Target:  5'- uCGGGUCGuaGCCcaGCgGCAGGUCuuUGCgCGGg -3'
miRNA:   3'- -GCCCAGC--UGG--UG-CGUCCGGc-ACG-GCC- -5'
19536 5' -62.2 NC_004685.1 + 55678 0.66 0.471445
Target:  5'- aGGGU--GCgACGCuGGCCG-GCaCGGa -3'
miRNA:   3'- gCCCAgcUGgUGCGuCCGGCaCG-GCC- -5'
19536 5' -62.2 NC_004685.1 + 45537 0.66 0.465861
Target:  5'- gCGcGGU-GAUCACGCGGGCCacuacggagggcgcuGUGCUGc -3'
miRNA:   3'- -GC-CCAgCUGGUGCGUCCGG---------------CACGGCc -5'
19536 5' -62.2 NC_004685.1 + 21798 0.66 0.462157
Target:  5'- uCGGGUCcaucaACCACGCGGaGuuG-GcCCGGc -3'
miRNA:   3'- -GCCCAGc----UGGUGCGUC-CggCaC-GGCC- -5'
19536 5' -62.2 NC_004685.1 + 51555 0.66 0.455713
Target:  5'- cCGcGGUCGguGCCAcCGCccugaacucggacGGGCCGUaguugauccgcgacaGCCGGa -3'
miRNA:   3'- -GC-CCAGC--UGGU-GCG-------------UCCGGCA---------------CGGCC- -5'
19536 5' -62.2 NC_004685.1 + 44337 0.66 0.452966
Target:  5'- -uGGUCGA-CGCGguGGCCGcGaUCGGg -3'
miRNA:   3'- gcCCAGCUgGUGCguCCGGCaC-GGCC- -5'
19536 5' -62.2 NC_004685.1 + 2232 0.66 0.452966
Target:  5'- cCGGGUgccaGACC-UGCcuGCCGcccgGCCGGg -3'
miRNA:   3'- -GCCCAg---CUGGuGCGucCGGCa---CGGCC- -5'
19536 5' -62.2 NC_004685.1 + 62131 0.66 0.452966
Target:  5'- cCGGGcUGGCCAC-CAGGCgG-GCCa- -3'
miRNA:   3'- -GCCCaGCUGGUGcGUCCGgCaCGGcc -5'
19536 5' -62.2 NC_004685.1 + 34705 0.66 0.452966
Target:  5'- gGGGUCGGacCCGCGCaacGGGU--UGCCGa -3'
miRNA:   3'- gCCCAGCU--GGUGCG---UCCGgcACGGCc -5'
19536 5' -62.2 NC_004685.1 + 21241 0.66 0.452966
Target:  5'- gCGGccaUCGugCugGCAGGC-GUGCCc- -3'
miRNA:   3'- -GCCc--AGCugGugCGUCCGgCACGGcc -5'
19536 5' -62.2 NC_004685.1 + 64169 0.66 0.452053
Target:  5'- aGGGgccgaguUCGACUugGCGGuGCCGcggUGUCGa -3'
miRNA:   3'- gCCC-------AGCUGGugCGUC-CGGC---ACGGCc -5'
19536 5' -62.2 NC_004685.1 + 58557 0.66 0.443876
Target:  5'- uGGcGUCGGCCACcgcgccCAGGUCGaUGCCc- -3'
miRNA:   3'- gCC-CAGCUGGUGc-----GUCCGGC-ACGGcc -5'
19536 5' -62.2 NC_004685.1 + 56360 0.66 0.443876
Target:  5'- ---uUCGGCCACGCGGGCCagcucaGCCa- -3'
miRNA:   3'- gcccAGCUGGUGCGUCCGGca----CGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.