miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19537 5' -58.7 NC_004685.1 + 9259 0.66 0.6058
Target:  5'- -gCugUGACCCGCUG--GGUGUCgGg -3'
miRNA:   3'- uaGugGCUGGGCGACagCCACAGgUg -5'
19537 5' -58.7 NC_004685.1 + 64293 0.66 0.6058
Target:  5'- uUCACC-ACCgUGgUGUCGGUGUCagccaACa -3'
miRNA:   3'- uAGUGGcUGG-GCgACAGCCACAGg----UG- -5'
19537 5' -58.7 NC_004685.1 + 51663 0.66 0.6058
Target:  5'- -aCugCGGCagCGCcucGUCGGUGcCCGCg -3'
miRNA:   3'- uaGugGCUGg-GCGa--CAGCCACaGGUG- -5'
19537 5' -58.7 NC_004685.1 + 14718 0.66 0.604739
Target:  5'- -aCGCCGACacggugaCCGaggUGUCGGUGUgggugCCGCa -3'
miRNA:   3'- uaGUGGCUG-------GGCg--ACAGCCACA-----GGUG- -5'
19537 5' -58.7 NC_004685.1 + 47950 0.66 0.595199
Target:  5'- cGUCGCCGugCaucaCGCUGUCGGcGgaaCCGa -3'
miRNA:   3'- -UAGUGGCugG----GCGACAGCCaCa--GGUg -5'
19537 5' -58.7 NC_004685.1 + 38840 0.66 0.595199
Target:  5'- uUCGgCuGCCgCGCcgGUCGGUGcCCGCg -3'
miRNA:   3'- uAGUgGcUGG-GCGa-CAGCCACaGGUG- -5'
19537 5' -58.7 NC_004685.1 + 25100 0.66 0.595199
Target:  5'- -gUACCGGCCCuGCaucUCGGUGacggCCACc -3'
miRNA:   3'- uaGUGGCUGGG-CGac-AGCCACa---GGUG- -5'
19537 5' -58.7 NC_004685.1 + 1096 0.66 0.584627
Target:  5'- --gGCCGGCCgGCUGguguUCGGUuUCCGa -3'
miRNA:   3'- uagUGGCUGGgCGAC----AGCCAcAGGUg -5'
19537 5' -58.7 NC_004685.1 + 13752 0.66 0.584627
Target:  5'- cAUCGCCGGgCUGCUGcUGGcGUaCCGCc -3'
miRNA:   3'- -UAGUGGCUgGGCGACaGCCaCA-GGUG- -5'
19537 5' -58.7 NC_004685.1 + 39856 0.66 0.584627
Target:  5'- -cCAUCGACgCGCUGgUGGcGUCCAa -3'
miRNA:   3'- uaGUGGCUGgGCGACaGCCaCAGGUg -5'
19537 5' -58.7 NC_004685.1 + 22494 0.66 0.583572
Target:  5'- -aCACCGgaACCCaggcucgGCUGaucuucuccgCGGUGUCCGCc -3'
miRNA:   3'- uaGUGGC--UGGG-------CGACa---------GCCACAGGUG- -5'
19537 5' -58.7 NC_004685.1 + 55889 0.66 0.574092
Target:  5'- -aCGCCGaACCCGCcGaCGGUGUgggCCAg -3'
miRNA:   3'- uaGUGGC-UGGGCGaCaGCCACA---GGUg -5'
19537 5' -58.7 NC_004685.1 + 8543 0.66 0.574092
Target:  5'- cUCGauGAUCCGgUGUCGG-GUCUGCg -3'
miRNA:   3'- uAGUggCUGGGCgACAGCCaCAGGUG- -5'
19537 5' -58.7 NC_004685.1 + 55087 0.66 0.563602
Target:  5'- -gCACCuuCUCGCcgucGUCGGUGUCgACg -3'
miRNA:   3'- uaGUGGcuGGGCGa---CAGCCACAGgUG- -5'
19537 5' -58.7 NC_004685.1 + 35180 0.66 0.553163
Target:  5'- -gCACCaACCCGCUGcUCGauacgaGUCCGCu -3'
miRNA:   3'- uaGUGGcUGGGCGAC-AGCca----CAGGUG- -5'
19537 5' -58.7 NC_004685.1 + 46736 0.67 0.519166
Target:  5'- cUCACCGACCgGCagcGUCguuuuccagauuugGGUGgCCACg -3'
miRNA:   3'- uAGUGGCUGGgCGa--CAG--------------CCACaGGUG- -5'
19537 5' -58.7 NC_004685.1 + 26017 0.67 0.512057
Target:  5'- --aGCCGAUCCGUUcgCGGUG-CCACu -3'
miRNA:   3'- uagUGGCUGGGCGAcaGCCACaGGUG- -5'
19537 5' -58.7 NC_004685.1 + 3899 0.67 0.512057
Target:  5'- -gCugCuGCCCGCUGccCGGUuUCCACa -3'
miRNA:   3'- uaGugGcUGGGCGACa-GCCAcAGGUG- -5'
19537 5' -58.7 NC_004685.1 + 57187 0.67 0.501974
Target:  5'- cGUUGCCGACCuCGUUGgcggcacCGGccgcGUCCACg -3'
miRNA:   3'- -UAGUGGCUGG-GCGACa------GCCa---CAGGUG- -5'
19537 5' -58.7 NC_004685.1 + 54978 0.67 0.501974
Target:  5'- -gCACgGGCCgCGCcGUUGGUGauggCCACg -3'
miRNA:   3'- uaGUGgCUGG-GCGaCAGCCACa---GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.