Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19538 | 3' | -58.4 | NC_004685.1 | + | 61654 | 1.12 | 0.000531 |
Target: 5'- cGGGUGACGUACAGCCCGUCGCCCAGGu -3' miRNA: 3'- -CCCACUGCAUGUCGGGCAGCGGGUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 56534 | 0.79 | 0.11019 |
Target: 5'- gGGGgcuaucGACGUagGCGGCCCuccgcGUCGCCCGGGc -3' miRNA: 3'- -CCCa-----CUGCA--UGUCGGG-----CAGCGGGUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 58554 | 0.78 | 0.129271 |
Target: 5'- uGGUGGCGU-CGGCCaccgCGCCCAGGu -3' miRNA: 3'- cCCACUGCAuGUCGGgca-GCGGGUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 55833 | 0.73 | 0.277019 |
Target: 5'- gGGGUcGACGUGCaucAGCUCGcCGCCCGu- -3' miRNA: 3'- -CCCA-CUGCAUG---UCGGGCaGCGGGUcc -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 22967 | 0.73 | 0.28374 |
Target: 5'- cGGUGA-GUACAGCCCGaCGCUgcucagucagauCAGGg -3' miRNA: 3'- cCCACUgCAUGUCGGGCaGCGG------------GUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 3879 | 0.71 | 0.374462 |
Target: 5'- aGGGUGGCuugugauggaGUGCugcuGCCCGcUGCCCGGu -3' miRNA: 3'- -CCCACUG----------CAUGu---CGGGCaGCGGGUCc -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 1155 | 0.7 | 0.426646 |
Target: 5'- aGGGUGGCccucggccaucGUGCAGCggcaGUCGUCCAGc -3' miRNA: 3'- -CCCACUG-----------CAUGUCGgg--CAGCGGGUCc -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 24976 | 0.7 | 0.408771 |
Target: 5'- cGGUGAUGaacaGCGGCCgggUGUCcgGCCCGGGg -3' miRNA: 3'- cCCACUGCa---UGUCGG---GCAG--CGGGUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 3115 | 0.69 | 0.482908 |
Target: 5'- aGGGUGACGUccugggugaGGCCguCGUCGCUCAu- -3' miRNA: 3'- -CCCACUGCAug-------UCGG--GCAGCGGGUcc -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 29034 | 0.69 | 0.492635 |
Target: 5'- cGGUGACa-GCAGCgucCCGUCGCgCAGa -3' miRNA: 3'- cCCACUGcaUGUCG---GGCAGCGgGUCc -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 17649 | 0.69 | 0.502451 |
Target: 5'- aGGUGGCGUGgcUGGCCaagauGUCGaCCGGGg -3' miRNA: 3'- cCCACUGCAU--GUCGGg----CAGCgGGUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 26001 | 0.69 | 0.482908 |
Target: 5'- aGGGUG-C--GCAGCCgGUCGCCgAGc -3' miRNA: 3'- -CCCACuGcaUGUCGGgCAGCGGgUCc -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 51604 | 0.68 | 0.552694 |
Target: 5'- cGGUcaGCuucUGCGGCCCGaaGCCCAGGu -3' miRNA: 3'- cCCAc-UGc--AUGUCGGGCagCGGGUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 10894 | 0.68 | 0.512351 |
Target: 5'- cGGUGGCGUGuCGGCCgaCG-CGCUCGGu -3' miRNA: 3'- cCCACUGCAU-GUCGG--GCaGCGGGUCc -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 66542 | 0.68 | 0.522331 |
Target: 5'- uGGGUGACGUuCGGCgCGaugagCGacgacggccucaCCCAGGa -3' miRNA: 3'- -CCCACUGCAuGUCGgGCa----GC------------GGGUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 6381 | 0.68 | 0.542508 |
Target: 5'- aGGGUGACaucgACuGCCCGaaGUgCGGGg -3' miRNA: 3'- -CCCACUGca--UGuCGGGCagCGgGUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 60041 | 0.68 | 0.542508 |
Target: 5'- gGGGUGGCGU-C-GCCCuucgggGUgGCCCGGu -3' miRNA: 3'- -CCCACUGCAuGuCGGG------CAgCGGGUCc -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 62847 | 0.68 | 0.512351 |
Target: 5'- gGGGUcACGgcgGgAGCCgGUgCGCCUGGGg -3' miRNA: 3'- -CCCAcUGCa--UgUCGGgCA-GCGGGUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 48323 | 0.68 | 0.522331 |
Target: 5'- cGGGUccagcugccgucGGCcugaauCGGCCCGUCGCaCAGGg -3' miRNA: 3'- -CCCA------------CUGcau---GUCGGGCAGCGgGUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 31881 | 0.68 | 0.512351 |
Target: 5'- aGGUGcCGUACGGUUCGcCGUacuaCCAGGu -3' miRNA: 3'- cCCACuGCAUGUCGGGCaGCG----GGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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