Results 21 - 33 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19538 | 3' | -58.4 | NC_004685.1 | + | 60041 | 0.68 | 0.542508 |
Target: 5'- gGGGUGGCGU-C-GCCCuucgggGUgGCCCGGu -3' miRNA: 3'- -CCCACUGCAuGuCGGG------CAgCGGGUCc -5' |
|||||||
19538 | 3' | -58.4 | NC_004685.1 | + | 6381 | 0.68 | 0.542508 |
Target: 5'- aGGGUGACaucgACuGCCCGaaGUgCGGGg -3' miRNA: 3'- -CCCACUGca--UGuCGGGCagCGgGUCC- -5' |
|||||||
19538 | 3' | -58.4 | NC_004685.1 | + | 51604 | 0.68 | 0.552694 |
Target: 5'- cGGUcaGCuucUGCGGCCCGaaGCCCAGGu -3' miRNA: 3'- cCCAc-UGc--AUGUCGGGCagCGGGUCC- -5' |
|||||||
19538 | 3' | -58.4 | NC_004685.1 | + | 62180 | 0.67 | 0.562936 |
Target: 5'- cGGGUacGGCuUGCGGCCCG-CGCCUu-- -3' miRNA: 3'- -CCCA--CUGcAUGUCGGGCaGCGGGucc -5' |
|||||||
19538 | 3' | -58.4 | NC_004685.1 | + | 19964 | 0.67 | 0.582529 |
Target: 5'- cGGGUucagcugGACGcuggACaaGGCCCG-CGCCCGGu -3' miRNA: 3'- -CCCA-------CUGCa---UG--UCGGGCaGCGGGUCc -5' |
|||||||
19538 | 3' | -58.4 | NC_004685.1 | + | 7785 | 0.67 | 0.583564 |
Target: 5'- cGGUGcGCG-ACGGCCUGUgGCaCuCGGGg -3' miRNA: 3'- cCCAC-UGCaUGUCGGGCAgCG-G-GUCC- -5' |
|||||||
19538 | 3' | -58.4 | NC_004685.1 | + | 34179 | 0.67 | 0.593936 |
Target: 5'- cGGaGAUGUACAcCCCGUCGCgaCCuGGc -3' miRNA: 3'- cCCaCUGCAUGUcGGGCAGCG--GGuCC- -5' |
|||||||
19538 | 3' | -58.4 | NC_004685.1 | + | 36459 | 0.67 | 0.604338 |
Target: 5'- uGGUGAaguugccgcCGaGCAGCuuGUCGaCCGGGu -3' miRNA: 3'- cCCACU---------GCaUGUCGggCAGCgGGUCC- -5' |
|||||||
19538 | 3' | -58.4 | NC_004685.1 | + | 67061 | 0.67 | 0.614761 |
Target: 5'- aGGUGugG-GCAG-CCGUCGCUgccgagCAGGc -3' miRNA: 3'- cCCACugCaUGUCgGGCAGCGG------GUCC- -5' |
|||||||
19538 | 3' | -58.4 | NC_004685.1 | + | 50567 | 0.66 | 0.624153 |
Target: 5'- cGGaUGACGUugGcgaugugaGCCUccgucguGUUGCCCAGGu -3' miRNA: 3'- cCC-ACUGCAugU--------CGGG-------CAGCGGGUCC- -5' |
|||||||
19538 | 3' | -58.4 | NC_004685.1 | + | 18317 | 0.66 | 0.635639 |
Target: 5'- cGGUGcAgGU--GGCCCuGUCGCgCAGGg -3' miRNA: 3'- cCCAC-UgCAugUCGGG-CAGCGgGUCC- -5' |
|||||||
19538 | 3' | -58.4 | NC_004685.1 | + | 66995 | 0.66 | 0.677292 |
Target: 5'- cGGUGAUGgcggcgacaGCGGCCgCGUCucCCCAGa -3' miRNA: 3'- cCCACUGCa--------UGUCGG-GCAGc-GGGUCc -5' |
|||||||
19538 | 3' | -58.4 | NC_004685.1 | + | 2226 | 0.66 | 0.677292 |
Target: 5'- uGGGUGccGgGUGCcagaccuGCCUGcCGCCCGGc -3' miRNA: 3'- -CCCAC--UgCAUGu------CGGGCaGCGGGUCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home