miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19538 3' -58.4 NC_004685.1 + 51604 0.68 0.552694
Target:  5'- cGGUcaGCuucUGCGGCCCGaaGCCCAGGu -3'
miRNA:   3'- cCCAc-UGc--AUGUCGGGCagCGGGUCC- -5'
19538 3' -58.4 NC_004685.1 + 53078 0.68 0.532385
Target:  5'- cGGUGGaGcGCAGCUCGUCGgCCCAc- -3'
miRNA:   3'- cCCACUgCaUGUCGGGCAGC-GGGUcc -5'
19538 3' -58.4 NC_004685.1 + 55833 0.73 0.277019
Target:  5'- gGGGUcGACGUGCaucAGCUCGcCGCCCGu- -3'
miRNA:   3'- -CCCA-CUGCAUG---UCGGGCaGCGGGUcc -5'
19538 3' -58.4 NC_004685.1 + 56534 0.79 0.11019
Target:  5'- gGGGgcuaucGACGUagGCGGCCCuccgcGUCGCCCGGGc -3'
miRNA:   3'- -CCCa-----CUGCA--UGUCGGG-----CAGCGGGUCC- -5'
19538 3' -58.4 NC_004685.1 + 58554 0.78 0.129271
Target:  5'- uGGUGGCGU-CGGCCaccgCGCCCAGGu -3'
miRNA:   3'- cCCACUGCAuGUCGGgca-GCGGGUCC- -5'
19538 3' -58.4 NC_004685.1 + 60041 0.68 0.542508
Target:  5'- gGGGUGGCGU-C-GCCCuucgggGUgGCCCGGu -3'
miRNA:   3'- -CCCACUGCAuGuCGGG------CAgCGGGUCc -5'
19538 3' -58.4 NC_004685.1 + 61654 1.12 0.000531
Target:  5'- cGGGUGACGUACAGCCCGUCGCCCAGGu -3'
miRNA:   3'- -CCCACUGCAUGUCGGGCAGCGGGUCC- -5'
19538 3' -58.4 NC_004685.1 + 62180 0.67 0.562936
Target:  5'- cGGGUacGGCuUGCGGCCCG-CGCCUu-- -3'
miRNA:   3'- -CCCA--CUGcAUGUCGGGCaGCGGGucc -5'
19538 3' -58.4 NC_004685.1 + 62847 0.68 0.512351
Target:  5'- gGGGUcACGgcgGgAGCCgGUgCGCCUGGGg -3'
miRNA:   3'- -CCCAcUGCa--UgUCGGgCA-GCGGGUCC- -5'
19538 3' -58.4 NC_004685.1 + 64435 0.68 0.542508
Target:  5'- cGGUGAUGgucuUGCAGCCC-UCGUagaucUCAGGg -3'
miRNA:   3'- cCCACUGC----AUGUCGGGcAGCG-----GGUCC- -5'
19538 3' -58.4 NC_004685.1 + 66542 0.68 0.522331
Target:  5'- uGGGUGACGUuCGGCgCGaugagCGacgacggccucaCCCAGGa -3'
miRNA:   3'- -CCCACUGCAuGUCGgGCa----GC------------GGGUCC- -5'
19538 3' -58.4 NC_004685.1 + 66995 0.66 0.677292
Target:  5'- cGGUGAUGgcggcgacaGCGGCCgCGUCucCCCAGa -3'
miRNA:   3'- cCCACUGCa--------UGUCGG-GCAGc-GGGUCc -5'
19538 3' -58.4 NC_004685.1 + 67061 0.67 0.614761
Target:  5'- aGGUGugG-GCAG-CCGUCGCUgccgagCAGGc -3'
miRNA:   3'- cCCACugCaUGUCgGGCAGCGG------GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.