Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19538 | 3' | -58.4 | NC_004685.1 | + | 60041 | 0.68 | 0.542508 |
Target: 5'- gGGGUGGCGU-C-GCCCuucgggGUgGCCCGGu -3' miRNA: 3'- -CCCACUGCAuGuCGGG------CAgCGGGUCc -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 56534 | 0.79 | 0.11019 |
Target: 5'- gGGGgcuaucGACGUagGCGGCCCuccgcGUCGCCCGGGc -3' miRNA: 3'- -CCCa-----CUGCA--UGUCGGG-----CAGCGGGUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 18317 | 0.66 | 0.635639 |
Target: 5'- cGGUGcAgGU--GGCCCuGUCGCgCAGGg -3' miRNA: 3'- cCCAC-UgCAugUCGGG-CAGCGgGUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 67061 | 0.67 | 0.614761 |
Target: 5'- aGGUGugG-GCAG-CCGUCGCUgccgagCAGGc -3' miRNA: 3'- cCCACugCaUGUCgGGCAGCGG------GUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 36459 | 0.67 | 0.604338 |
Target: 5'- uGGUGAaguugccgcCGaGCAGCuuGUCGaCCGGGu -3' miRNA: 3'- cCCACU---------GCaUGUCGggCAGCgGGUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 34179 | 0.67 | 0.593936 |
Target: 5'- cGGaGAUGUACAcCCCGUCGCgaCCuGGc -3' miRNA: 3'- cCCaCUGCAUGUcGGGCAGCG--GGuCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 7785 | 0.67 | 0.583564 |
Target: 5'- cGGUGcGCG-ACGGCCUGUgGCaCuCGGGg -3' miRNA: 3'- cCCAC-UGCaUGUCGGGCAgCG-G-GUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 19964 | 0.67 | 0.582529 |
Target: 5'- cGGGUucagcugGACGcuggACaaGGCCCG-CGCCCGGu -3' miRNA: 3'- -CCCA-------CUGCa---UG--UCGGGCaGCGGGUCc -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 51604 | 0.68 | 0.552694 |
Target: 5'- cGGUcaGCuucUGCGGCCCGaaGCCCAGGu -3' miRNA: 3'- cCCAc-UGc--AUGUCGGGCagCGGGUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 3879 | 0.71 | 0.374462 |
Target: 5'- aGGGUGGCuugugauggaGUGCugcuGCCCGcUGCCCGGu -3' miRNA: 3'- -CCCACUG----------CAUGu---CGGGCaGCGGGUCc -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 29034 | 0.69 | 0.492635 |
Target: 5'- cGGUGACa-GCAGCgucCCGUCGCgCAGa -3' miRNA: 3'- cCCACUGcaUGUCG---GGCAGCGgGUCc -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 17649 | 0.69 | 0.502451 |
Target: 5'- aGGUGGCGUGgcUGGCCaagauGUCGaCCGGGg -3' miRNA: 3'- cCCACUGCAU--GUCGGg----CAGCgGGUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 6381 | 0.68 | 0.542508 |
Target: 5'- aGGGUGACaucgACuGCCCGaaGUgCGGGg -3' miRNA: 3'- -CCCACUGca--UGuCGGGCagCGgGUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 26001 | 0.69 | 0.482908 |
Target: 5'- aGGGUG-C--GCAGCCgGUCGCCgAGc -3' miRNA: 3'- -CCCACuGcaUGUCGGgCAGCGGgUCc -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 66542 | 0.68 | 0.522331 |
Target: 5'- uGGGUGACGUuCGGCgCGaugagCGacgacggccucaCCCAGGa -3' miRNA: 3'- -CCCACUGCAuGUCGgGCa----GC------------GGGUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 10894 | 0.68 | 0.512351 |
Target: 5'- cGGUGGCGUGuCGGCCgaCG-CGCUCGGu -3' miRNA: 3'- cCCACUGCAU-GUCGG--GCaGCGGGUCc -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 24976 | 0.7 | 0.408771 |
Target: 5'- cGGUGAUGaacaGCGGCCgggUGUCcgGCCCGGGg -3' miRNA: 3'- cCCACUGCa---UGUCGG---GCAG--CGGGUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 12781 | 0.68 | 0.522331 |
Target: 5'- -aGUGcACGU-CAGgCCaUCGCCCAGGc -3' miRNA: 3'- ccCAC-UGCAuGUCgGGcAGCGGGUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 62847 | 0.68 | 0.512351 |
Target: 5'- gGGGUcACGgcgGgAGCCgGUgCGCCUGGGg -3' miRNA: 3'- -CCCAcUGCa--UgUCGGgCA-GCGGGUCC- -5' |
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19538 | 3' | -58.4 | NC_004685.1 | + | 64435 | 0.68 | 0.542508 |
Target: 5'- cGGUGAUGgucuUGCAGCCC-UCGUagaucUCAGGg -3' miRNA: 3'- cCCACUGC----AUGUCGGGcAGCG-----GGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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