miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19538 5' -54.9 NC_004685.1 + 26877 0.66 0.806637
Target:  5'- gGCCCAGAagguucaAgUUCAGaucgccaacgagcucGCGgugcUGCGCGCCg -3'
miRNA:   3'- -CGGGUCU-------UgGAGUC---------------CGUa---ACGCGUGG- -5'
19538 5' -54.9 NC_004685.1 + 63 0.66 0.803805
Target:  5'- cGUUC-GAGCCg-GGGCGggcGCGCGCCc -3'
miRNA:   3'- -CGGGuCUUGGagUCCGUaa-CGCGUGG- -5'
19538 5' -54.9 NC_004685.1 + 40942 0.66 0.803805
Target:  5'- uCCUGGGagACCg-AGGUGUcGCGCGCCa -3'
miRNA:   3'- cGGGUCU--UGGagUCCGUAaCGCGUGG- -5'
19538 5' -54.9 NC_004685.1 + 55383 0.66 0.794252
Target:  5'- aCCCGcAGCCUCGGcCAgcGuCGCACCc -3'
miRNA:   3'- cGGGUcUUGGAGUCcGUaaC-GCGUGG- -5'
19538 5' -54.9 NC_004685.1 + 11525 0.66 0.794252
Target:  5'- gGCgCAGAcgGCgCUCAugcgucGGCGcUGCGCugCg -3'
miRNA:   3'- -CGgGUCU--UG-GAGU------CCGUaACGCGugG- -5'
19538 5' -54.9 NC_004685.1 + 39963 0.66 0.787465
Target:  5'- -aCCGc-ACCUCGGGCcagacccugacccugGCGCACCg -3'
miRNA:   3'- cgGGUcuUGGAGUCCGuaa------------CGCGUGG- -5'
19538 5' -54.9 NC_004685.1 + 14486 0.66 0.784533
Target:  5'- cGCCUGGuccGACCU-GGGCGaccguggugUUGaCGCGCCg -3'
miRNA:   3'- -CGGGUC---UUGGAgUCCGU---------AAC-GCGUGG- -5'
19538 5' -54.9 NC_004685.1 + 21783 0.66 0.784533
Target:  5'- -aUCAGGAggUUUCAGGCAUga-GCACCg -3'
miRNA:   3'- cgGGUCUU--GGAGUCCGUAacgCGUGG- -5'
19538 5' -54.9 NC_004685.1 + 22144 0.66 0.784533
Target:  5'- uGCCCGccACCU--GGCAccGCGCGCUc -3'
miRNA:   3'- -CGGGUcuUGGAguCCGUaaCGCGUGG- -5'
19538 5' -54.9 NC_004685.1 + 52316 0.66 0.774659
Target:  5'- -gCCGGAcGCCguaguagCGGGCcaGUUGCcGCGCCc -3'
miRNA:   3'- cgGGUCU-UGGa------GUCCG--UAACG-CGUGG- -5'
19538 5' -54.9 NC_004685.1 + 47809 0.66 0.774659
Target:  5'- aGCCuCGGGcucaGCCUCGGGC-UUGgGC-UCg -3'
miRNA:   3'- -CGG-GUCU----UGGAGUCCGuAACgCGuGG- -5'
19538 5' -54.9 NC_004685.1 + 41805 0.67 0.754489
Target:  5'- gGCCCGGuuuCCgUCGaGCcggUGCGCAUCg -3'
miRNA:   3'- -CGGGUCuu-GG-AGUcCGua-ACGCGUGG- -5'
19538 5' -54.9 NC_004685.1 + 34398 0.67 0.754489
Target:  5'- cGCCCGGcAGCCaCAGGUccacGCuCACCg -3'
miRNA:   3'- -CGGGUC-UUGGaGUCCGuaa-CGcGUGG- -5'
19538 5' -54.9 NC_004685.1 + 62862 0.67 0.754489
Target:  5'- -gCCGGugcGCCUgGGGCggUGCGaaguaGCCg -3'
miRNA:   3'- cgGGUCu--UGGAgUCCGuaACGCg----UGG- -5'
19538 5' -54.9 NC_004685.1 + 6490 0.67 0.754489
Target:  5'- -aCCGGAACCaUCGaG-AUUGUGCACCc -3'
miRNA:   3'- cgGGUCUUGG-AGUcCgUAACGCGUGG- -5'
19538 5' -54.9 NC_004685.1 + 3940 0.67 0.754489
Target:  5'- gGCCUGGAcccucagcGgCUCAGGCucggGCGCGguCCa -3'
miRNA:   3'- -CGGGUCU--------UgGAGUCCGuaa-CGCGU--GG- -5'
19538 5' -54.9 NC_004685.1 + 34116 0.67 0.744214
Target:  5'- gGCCCccuGGAGCg-CGGGCAgguggUGCaGCugCg -3'
miRNA:   3'- -CGGG---UCUUGgaGUCCGUa----ACG-CGugG- -5'
19538 5' -54.9 NC_004685.1 + 11698 0.67 0.744214
Target:  5'- uGCCCGcuACCUCAucacccGGC--UGUGCGCUg -3'
miRNA:   3'- -CGGGUcuUGGAGU------CCGuaACGCGUGG- -5'
19538 5' -54.9 NC_004685.1 + 3790 0.67 0.744214
Target:  5'- cGCCCAGAACCcugccgugCuGGCu---CGCAUCu -3'
miRNA:   3'- -CGGGUCUUGGa-------GuCCGuaacGCGUGG- -5'
19538 5' -54.9 NC_004685.1 + 67443 0.67 0.744214
Target:  5'- aGCCCGGccgGGCggCAGGCAggucUG-GCACCc -3'
miRNA:   3'- -CGGGUC---UUGgaGUCCGUa---ACgCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.