miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19539 3' -56.5 NC_004685.1 + 66165 0.66 0.7538
Target:  5'- cGgcGU-GCUGCuuGGCgUGaUGGCCg -3'
miRNA:   3'- cCuuCAuCGACGggCCGgGCaACUGG- -5'
19539 3' -56.5 NC_004685.1 + 44276 0.66 0.7538
Target:  5'- cGAAGacGaCUGCCCGuGCCCGaaGGCUc -3'
miRNA:   3'- cCUUCauC-GACGGGC-CGGGCaaCUGG- -5'
19539 3' -56.5 NC_004685.1 + 43919 0.66 0.743728
Target:  5'- uGGcuGUGGCUGaaCGGCuccuauCCGcUGACCg -3'
miRNA:   3'- -CCuuCAUCGACggGCCG------GGCaACUGG- -5'
19539 3' -56.5 NC_004685.1 + 39618 0.66 0.743728
Target:  5'- cGGAAcaGGUUGCcgaaCCGGCCCGcgauGCCg -3'
miRNA:   3'- -CCUUcaUCGACG----GGCCGGGCaac-UGG- -5'
19539 3' -56.5 NC_004685.1 + 39031 0.66 0.743728
Target:  5'- cGGgcGUGGaCUGCCaauCGGCCgGgucACCg -3'
miRNA:   3'- -CCuuCAUC-GACGG---GCCGGgCaacUGG- -5'
19539 3' -56.5 NC_004685.1 + 116 0.66 0.742715
Target:  5'- aGGcGGUAGCgGCgaCCGGCgcgggcgcggcugCCGgggUGGCCg -3'
miRNA:   3'- -CCuUCAUCGaCG--GGCCG-------------GGCa--ACUGG- -5'
19539 3' -56.5 NC_004685.1 + 29261 0.66 0.73355
Target:  5'- gGGAcaGGUAGUUGCCgguCGGCCacucggucuCGUccaGGCCg -3'
miRNA:   3'- -CCU--UCAUCGACGG---GCCGG---------GCAa--CUGG- -5'
19539 3' -56.5 NC_004685.1 + 19520 0.66 0.73355
Target:  5'- ---cGUGGCUGaaagacgaCGGCCCGUUcGGCa -3'
miRNA:   3'- ccuuCAUCGACgg------GCCGGGCAA-CUGg -5'
19539 3' -56.5 NC_004685.1 + 30425 0.66 0.723276
Target:  5'- cGGcGAGgcGUUGCCCGacgccguucGCgCCGUUGuuGCCg -3'
miRNA:   3'- -CC-UUCauCGACGGGC---------CG-GGCAAC--UGG- -5'
19539 3' -56.5 NC_004685.1 + 50272 0.66 0.723276
Target:  5'- ---uGUAGCgggacaccagGCuuGGCCCGUcgucgUGAUCg -3'
miRNA:   3'- ccuuCAUCGa---------CGggCCGGGCA-----ACUGG- -5'
19539 3' -56.5 NC_004685.1 + 15081 0.66 0.712917
Target:  5'- cGggG-AGCUGCUCGGUgCCGagGuCCg -3'
miRNA:   3'- cCuuCaUCGACGGGCCG-GGCaaCuGG- -5'
19539 3' -56.5 NC_004685.1 + 41985 0.66 0.712917
Target:  5'- uGGAAG-AGgUGU--GGCCCGgcGGCCg -3'
miRNA:   3'- -CCUUCaUCgACGggCCGGGCaaCUGG- -5'
19539 3' -56.5 NC_004685.1 + 49314 0.67 0.670835
Target:  5'- cGAGGUA-CUGCUCGGCCgc--GGCCa -3'
miRNA:   3'- cCUUCAUcGACGGGCCGGgcaaCUGG- -5'
19539 3' -56.5 NC_004685.1 + 48433 0.67 0.670835
Target:  5'- uGgcGUAcuGCUGgCCGaGaCCGUUGACCa -3'
miRNA:   3'- cCuuCAU--CGACgGGC-CgGGCAACUGG- -5'
19539 3' -56.5 NC_004685.1 + 33298 0.67 0.660204
Target:  5'- cGggGaAGUUGCCCaGGCCgccgucgggcgCGgcGACCg -3'
miRNA:   3'- cCuuCaUCGACGGG-CCGG-----------GCaaCUGG- -5'
19539 3' -56.5 NC_004685.1 + 16734 0.67 0.660204
Target:  5'- --cGGUgcGGCUGUCCGGCgguggCGUgUGACCa -3'
miRNA:   3'- ccuUCA--UCGACGGGCCGg----GCA-ACUGG- -5'
19539 3' -56.5 NC_004685.1 + 48309 0.67 0.653813
Target:  5'- aGAAGUugcgggcacggguccAGCUGCCguCGGCCUGaaucGGCCc -3'
miRNA:   3'- cCUUCA---------------UCGACGG--GCCGGGCaa--CUGG- -5'
19539 3' -56.5 NC_004685.1 + 39547 0.67 0.649548
Target:  5'- uGGccGgGGCUGCCgGGCCgaGUgcGGCCg -3'
miRNA:   3'- -CCuuCaUCGACGGgCCGGg-CAa-CUGG- -5'
19539 3' -56.5 NC_004685.1 + 59958 0.67 0.649548
Target:  5'- --uGGUGGuCUGCCCGGCacggCCGgucACCg -3'
miRNA:   3'- ccuUCAUC-GACGGGCCG----GGCaacUGG- -5'
19539 3' -56.5 NC_004685.1 + 10210 0.67 0.649548
Target:  5'- cGGAGGacUGGC-GgCUGGCCgGUcUGGCCg -3'
miRNA:   3'- -CCUUC--AUCGaCgGGCCGGgCA-ACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.