miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19539 5' -57.6 NC_004685.1 + 3661 0.66 0.613426
Target:  5'- -cGuUGAGCCUGGcCCGCUUCuCGGCg- -3'
miRNA:   3'- uaCcACUUGGGUC-GGCGAAG-GUCGag -5'
19539 5' -57.6 NC_004685.1 + 59956 0.66 0.591685
Target:  5'- cAUGGUGGucuGCCCGGCacggccggucacCGCgcCCAGCg- -3'
miRNA:   3'- -UACCACU---UGGGUCG------------GCGaaGGUCGag -5'
19539 5' -57.6 NC_004685.1 + 54926 0.66 0.58086
Target:  5'- uUGGcUGAGCCgcugguacucgaUGGCCGCUUcgaccagugCCGGCUCc -3'
miRNA:   3'- uACC-ACUUGG------------GUCGGCGAA---------GGUCGAG- -5'
19539 5' -57.6 NC_004685.1 + 1679 0.66 0.570077
Target:  5'- --aGUG-ACCCAGCCGUcgggCCAGCcCa -3'
miRNA:   3'- uacCACuUGGGUCGGCGaa--GGUCGaG- -5'
19539 5' -57.6 NC_004685.1 + 24591 0.66 0.570077
Target:  5'- -cGGUGAGCC--GCCGUagUCCGGC-Ca -3'
miRNA:   3'- uaCCACUUGGguCGGCGa-AGGUCGaG- -5'
19539 5' -57.6 NC_004685.1 + 62938 0.66 0.570077
Target:  5'- -cGGcGAcauGCCCGGCCGa-UCCGGCg- -3'
miRNA:   3'- uaCCaCU---UGGGUCGGCgaAGGUCGag -5'
19539 5' -57.6 NC_004685.1 + 43033 0.67 0.548667
Target:  5'- -cGGUG-ACCU-GUCGCUUCUgaAGCUCc -3'
miRNA:   3'- uaCCACuUGGGuCGGCGAAGG--UCGAG- -5'
19539 5' -57.6 NC_004685.1 + 257 0.67 0.538055
Target:  5'- -cGGUGAcaaucGCguCCAGCUGCU-CCGGCgUCa -3'
miRNA:   3'- uaCCACU-----UG--GGUCGGCGAaGGUCG-AG- -5'
19539 5' -57.6 NC_004685.1 + 62418 0.67 0.531722
Target:  5'- uUGGUGAugaacaucaggccacACCCu-CCGUgaucuuUUCCAGCUCg -3'
miRNA:   3'- uACCACU---------------UGGGucGGCG------AAGGUCGAG- -5'
19539 5' -57.6 NC_004685.1 + 16451 0.67 0.517052
Target:  5'- cUGGUaGGccuGCCCGG-CGCgaCCGGCUCg -3'
miRNA:   3'- uACCA-CU---UGGGUCgGCGaaGGUCGAG- -5'
19539 5' -57.6 NC_004685.1 + 30050 0.67 0.506674
Target:  5'- -cGGUGGugUCGGCauCGCgggCCGGUUCg -3'
miRNA:   3'- uaCCACUugGGUCG--GCGaa-GGUCGAG- -5'
19539 5' -57.6 NC_004685.1 + 8517 0.68 0.4761
Target:  5'- -cGGaUGGGCCgCAGUCGaccagCCGGCUCg -3'
miRNA:   3'- uaCC-ACUUGG-GUCGGCgaa--GGUCGAG- -5'
19539 5' -57.6 NC_004685.1 + 53366 0.68 0.466112
Target:  5'- -cGGUG-GCCgCGGCgaUGCUggCCAGCUCg -3'
miRNA:   3'- uaCCACuUGG-GUCG--GCGAa-GGUCGAG- -5'
19539 5' -57.6 NC_004685.1 + 47895 0.69 0.417897
Target:  5'- cGUGGuUGAugACCCGaCUGCgaCCAGCUCa -3'
miRNA:   3'- -UACC-ACU--UGGGUcGGCGaaGGUCGAG- -5'
19539 5' -57.6 NC_004685.1 + 49316 0.69 0.399478
Target:  5'- -aGGUacuGCUCGGCCGCggCCAGCa- -3'
miRNA:   3'- uaCCAcu-UGGGUCGGCGaaGGUCGag -5'
19539 5' -57.6 NC_004685.1 + 51457 0.7 0.381586
Target:  5'- --cGUGcGCCCAGCCGacgaCAGCUCg -3'
miRNA:   3'- uacCACuUGGGUCGGCgaagGUCGAG- -5'
19539 5' -57.6 NC_004685.1 + 17389 0.7 0.364236
Target:  5'- -cGGUGcAACCU-GCCGCUgaUCCGGCa- -3'
miRNA:   3'- uaCCAC-UUGGGuCGGCGA--AGGUCGag -5'
19539 5' -57.6 NC_004685.1 + 59591 0.71 0.339253
Target:  5'- -gGGUGAGCgcaCCGGCUGCgccUUCCAGC-Ca -3'
miRNA:   3'- uaCCACUUG---GGUCGGCG---AAGGUCGaG- -5'
19539 5' -57.6 NC_004685.1 + 50218 0.72 0.278136
Target:  5'- gGUGGUGAAaaucugcUCCAG-CGUUUCCAGCUg -3'
miRNA:   3'- -UACCACUU-------GGGUCgGCGAAGGUCGAg -5'
19539 5' -57.6 NC_004685.1 + 23996 0.72 0.271915
Target:  5'- -gGGUGAgcuuGCCCAGCC-CgaccUCCAGCUg -3'
miRNA:   3'- uaCCACU----UGGGUCGGcGa---AGGUCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.