miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1954 3' -54.5 NC_001347.2 + 153251 0.66 0.985539
Target:  5'- gGCCGgCGACggcgGUUCgCCGuGGUuguuGGCCGa -3'
miRNA:   3'- -CGGCgGUUGa---CAAGgGGC-UCA----UUGGC- -5'
1954 3' -54.5 NC_001347.2 + 139866 0.66 0.985372
Target:  5'- cCUGCCGaaucuauGCUcUUUUCCGAGUGGCCu -3'
miRNA:   3'- cGGCGGU-------UGAcAAGGGGCUCAUUGGc -5'
1954 3' -54.5 NC_001347.2 + 29199 0.66 0.983803
Target:  5'- -aCGCCGACa---CCCCGGGUGuacuACCa -3'
miRNA:   3'- cgGCGGUUGacaaGGGGCUCAU----UGGc -5'
1954 3' -54.5 NC_001347.2 + 201145 0.66 0.981914
Target:  5'- aCCGUUGACUGUgacgCCaCGAGUGACg- -3'
miRNA:   3'- cGGCGGUUGACAa---GGgGCUCAUUGgc -5'
1954 3' -54.5 NC_001347.2 + 39853 0.66 0.981914
Target:  5'- gGCCGCguGgUGggUCCUCGAGggGCgGg -3'
miRNA:   3'- -CGGCGguUgACa-AGGGGCUCauUGgC- -5'
1954 3' -54.5 NC_001347.2 + 200325 0.66 0.981914
Target:  5'- cGCagGCCAGgUGUUgCCCGuGGUcuGGCCGc -3'
miRNA:   3'- -CGg-CGGUUgACAAgGGGC-UCA--UUGGC- -5'
1954 3' -54.5 NC_001347.2 + 69634 0.66 0.979863
Target:  5'- cGCCGcCCAACUGcgcgUCCCa-GGUAGgUGg -3'
miRNA:   3'- -CGGC-GGUUGACa---AGGGgcUCAUUgGC- -5'
1954 3' -54.5 NC_001347.2 + 4872 0.66 0.979863
Target:  5'- cGCCGUC-GCaucgCCCCGAGgcGCUGc -3'
miRNA:   3'- -CGGCGGuUGacaaGGGGCUCauUGGC- -5'
1954 3' -54.5 NC_001347.2 + 52009 0.66 0.979863
Target:  5'- cCCGCCGGauuUUGUUCCUCGAGc--CCu -3'
miRNA:   3'- cGGCGGUU---GACAAGGGGCUCauuGGc -5'
1954 3' -54.5 NC_001347.2 + 184532 0.66 0.977645
Target:  5'- gGCCGCCGACa-----CCGAGUccguauGACCGa -3'
miRNA:   3'- -CGGCGGUUGacaaggGGCUCA------UUGGC- -5'
1954 3' -54.5 NC_001347.2 + 64875 0.66 0.977645
Target:  5'- cGCCGCCGAgaaagUCCCCgcgGAGUGccCCGa -3'
miRNA:   3'- -CGGCGGUUgaca-AGGGG---CUCAUu-GGC- -5'
1954 3' -54.5 NC_001347.2 + 36407 0.66 0.977645
Target:  5'- gGCUgGCguGCUGUUUUCCGuGUuGCCGa -3'
miRNA:   3'- -CGG-CGguUGACAAGGGGCuCAuUGGC- -5'
1954 3' -54.5 NC_001347.2 + 161586 0.67 0.971867
Target:  5'- cGCCGCCGGCUacgCgUCCGGGUuccagucgcugccaGACCGc -3'
miRNA:   3'- -CGGCGGUUGAcaaG-GGGCUCA--------------UUGGC- -5'
1954 3' -54.5 NC_001347.2 + 164567 0.67 0.969913
Target:  5'- aCCGCCuGCUGcgCCgCCGAuugcgGACCGc -3'
miRNA:   3'- cGGCGGuUGACaaGG-GGCUca---UUGGC- -5'
1954 3' -54.5 NC_001347.2 + 74363 0.68 0.956864
Target:  5'- uGCCGCUaucuauaggcgAugUGUUCCCUGAcgGUGugUGu -3'
miRNA:   3'- -CGGCGG-----------UugACAAGGGGCU--CAUugGC- -5'
1954 3' -54.5 NC_001347.2 + 189914 0.68 0.956864
Target:  5'- -aCGCCGAC-GUaUCCCGcGGUAACCa -3'
miRNA:   3'- cgGCGGUUGaCAaGGGGC-UCAUUGGc -5'
1954 3' -54.5 NC_001347.2 + 168431 0.68 0.953079
Target:  5'- aGCCGUCAGCguggCCCCGuuguGGUAgaacggcaACCGg -3'
miRNA:   3'- -CGGCGGUUGacaaGGGGC----UCAU--------UGGC- -5'
1954 3' -54.5 NC_001347.2 + 86030 0.68 0.953079
Target:  5'- aGCCGCUGACgaaggCCUCGuagaacuuGGUGGCCGa -3'
miRNA:   3'- -CGGCGGUUGacaa-GGGGC--------UCAUUGGC- -5'
1954 3' -54.5 NC_001347.2 + 193703 0.68 0.949075
Target:  5'- cGCUGCUGGCU-UUCCgCGAGUuGCUGg -3'
miRNA:   3'- -CGGCGGUUGAcAAGGgGCUCAuUGGC- -5'
1954 3' -54.5 NC_001347.2 + 66711 0.68 0.949075
Target:  5'- uGCCGCCGGCUGUUucuaCCaCCGccaccACCGc -3'
miRNA:   3'- -CGGCGGUUGACAA----GG-GGCucau-UGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.