miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1954 5' -53.7 NC_001347.2 + 198143 0.66 0.984787
Target:  5'- aGCGGggGUgGuGGGGAucGGCAGa- -3'
miRNA:   3'- cUGCCaaCGaCuCCCCUuuCCGUUgu -5'
1954 5' -53.7 NC_001347.2 + 156765 0.66 0.976361
Target:  5'- gGAgGaGUUGCUGgcucuggcGGGagaaGGGAAGGCGGCAg -3'
miRNA:   3'- -CUgC-CAACGAC--------UCC----CCUUUCCGUUGU- -5'
1954 5' -53.7 NC_001347.2 + 155103 0.66 0.976361
Target:  5'- uGGCGGggUGUUGAGGauuuaccuGGuauGAGGCGGCc -3'
miRNA:   3'- -CUGCCa-ACGACUCC--------CCu--UUCCGUUGu -5'
1954 5' -53.7 NC_001347.2 + 44074 0.67 0.973537
Target:  5'- -gUGGUacUGCUGAugguagucgggacGGaGGAGAGGCGAUg -3'
miRNA:   3'- cuGCCA--ACGACU-------------CC-CCUUUCCGUUGu -5'
1954 5' -53.7 NC_001347.2 + 136727 0.67 0.968096
Target:  5'- aGGgGGggGgUGAGGGGggGGGguuACGg -3'
miRNA:   3'- -CUgCCaaCgACUCCCCuuUCCgu-UGU- -5'
1954 5' -53.7 NC_001347.2 + 67000 0.68 0.94582
Target:  5'- uGCGGcUGCUGGGGGGccaacgccGGCuGCGg -3'
miRNA:   3'- cUGCCaACGACUCCCCuuu-----CCGuUGU- -5'
1954 5' -53.7 NC_001347.2 + 135763 0.68 0.936561
Target:  5'- cGugGGgg---GAGGGGAAGGGCG-CGg -3'
miRNA:   3'- -CugCCaacgaCUCCCCUUUCCGUuGU- -5'
1954 5' -53.7 NC_001347.2 + 142578 0.69 0.926351
Target:  5'- cGGCGGgaGCaGcGGGGGcggcgGGGGCAGCGg -3'
miRNA:   3'- -CUGCCaaCGaCuCCCCU-----UUCCGUUGU- -5'
1954 5' -53.7 NC_001347.2 + 1939 0.69 0.915185
Target:  5'- cGCGGUgGCUGGGcugcgcggcGGGGccGGCGACGg -3'
miRNA:   3'- cUGCCAaCGACUC---------CCCUuuCCGUUGU- -5'
1954 5' -53.7 NC_001347.2 + 44046 0.7 0.90307
Target:  5'- aGCGGUgguggcGCUG-GGGGu--GGCGGCAg -3'
miRNA:   3'- cUGCCAa-----CGACuCCCCuuuCCGUUGU- -5'
1954 5' -53.7 NC_001347.2 + 90624 0.7 0.896661
Target:  5'- uGACGGcaGUUGAGGGG-GAGGaGACGg -3'
miRNA:   3'- -CUGCCaaCGACUCCCCuUUCCgUUGU- -5'
1954 5' -53.7 NC_001347.2 + 35772 0.7 0.896661
Target:  5'- aACGGcaaguuguUUGCUcGGGGGAGcaucguGGGCAACAu -3'
miRNA:   3'- cUGCC--------AACGAcUCCCCUU------UCCGUUGU- -5'
1954 5' -53.7 NC_001347.2 + 173831 0.74 0.717913
Target:  5'- gGGCGGcgGCgGAGGaGGAgGAGGCGGCGg -3'
miRNA:   3'- -CUGCCaaCGaCUCC-CCU-UUCCGUUGU- -5'
1954 5' -53.7 NC_001347.2 + 155586 0.77 0.545555
Target:  5'- aGCGGUggGCUcGAGGGGGGAGGUggUg -3'
miRNA:   3'- cUGCCAa-CGA-CUCCCCUUUCCGuuGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.