miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19540 5' -60.7 NC_004685.1 + 12031 0.66 0.56316
Target:  5'- gCCGACGugaaGCUCGcggucaacgcGGC-CCGCGAGG-Cg -3'
miRNA:   3'- gGGCUGC----CGAGC----------CUGuGGCGCUCCaG- -5'
19540 5' -60.7 NC_004685.1 + 8221 0.66 0.56316
Target:  5'- gCCCGAcgacaacagcguCGGCUaCGGcgACGCUGCccAGGUCu -3'
miRNA:   3'- -GGGCU------------GCCGA-GCC--UGUGGCGc-UCCAG- -5'
19540 5' -60.7 NC_004685.1 + 31222 0.66 0.54704
Target:  5'- cCCCGGuggcaagggcguCGGCUCGGGCcuggucggcaucgcgGCCGCGcagauGGg- -3'
miRNA:   3'- -GGGCU------------GCCGAGCCUG---------------UGGCGCu----CCag -5'
19540 5' -60.7 NC_004685.1 + 21580 0.66 0.543032
Target:  5'- aCCUG-CGuaGCUCGGGCgACgGCuGGGUCg -3'
miRNA:   3'- -GGGCuGC--CGAGCCUG-UGgCGcUCCAG- -5'
19540 5' -60.7 NC_004685.1 + 21519 0.66 0.543032
Target:  5'- gCCCGACGaGCcgggccacaUCGGGCcaGCCGgGGuGGUg -3'
miRNA:   3'- -GGGCUGC-CG---------AGCCUG--UGGCgCU-CCAg -5'
19540 5' -60.7 NC_004685.1 + 21651 0.66 0.543032
Target:  5'- aCCGACGGUgggcCGuACAgccCCGUGgAGGUCa -3'
miRNA:   3'- gGGCUGCCGa---GCcUGU---GGCGC-UCCAG- -5'
19540 5' -60.7 NC_004685.1 + 50877 0.66 0.543032
Target:  5'- gCCGuCGGCgguugcgcgCGG-UGCCGCGcGGUCc -3'
miRNA:   3'- gGGCuGCCGa--------GCCuGUGGCGCuCCAG- -5'
19540 5' -60.7 NC_004685.1 + 28979 0.66 0.533056
Target:  5'- cCCCGACGcugguccugccGCU-GGGCACCGCGuucGUUc -3'
miRNA:   3'- -GGGCUGC-----------CGAgCCUGUGGCGCuc-CAG- -5'
19540 5' -60.7 NC_004685.1 + 57093 0.66 0.533056
Target:  5'- cCUCGGCGGCgcguUCGGACACgGUuuGGcCc -3'
miRNA:   3'- -GGGCUGCCG----AGCCUGUGgCGcuCCaG- -5'
19540 5' -60.7 NC_004685.1 + 38787 0.66 0.523147
Target:  5'- gUCGGCGGUUCGcACACCaucCGcGGUCg -3'
miRNA:   3'- gGGCUGCCGAGCcUGUGGc--GCuCCAG- -5'
19540 5' -60.7 NC_004685.1 + 7390 0.66 0.513308
Target:  5'- uCCCGACGGCaa--GCGgUGCGAGGg- -3'
miRNA:   3'- -GGGCUGCCGagccUGUgGCGCUCCag -5'
19540 5' -60.7 NC_004685.1 + 43463 0.66 0.512329
Target:  5'- gUCCGGCgacaucuGGCU-GGACAUCGCGuGGa- -3'
miRNA:   3'- -GGGCUG-------CCGAgCCUGUGGCGCuCCag -5'
19540 5' -60.7 NC_004685.1 + 34699 0.67 0.503547
Target:  5'- gCUgGAgGGgUCGGAC-CCGCGcaacGGGUUg -3'
miRNA:   3'- -GGgCUgCCgAGCCUGuGGCGC----UCCAG- -5'
19540 5' -60.7 NC_004685.1 + 12641 0.67 0.503547
Target:  5'- aCCGGCuGCUCGc-CGCCGgGcGGGUCa -3'
miRNA:   3'- gGGCUGcCGAGCcuGUGGCgC-UCCAG- -5'
19540 5' -60.7 NC_004685.1 + 9183 0.67 0.493867
Target:  5'- aCCG-CGuaUgCGaACACUGCGAGGUCg -3'
miRNA:   3'- gGGCuGCcgA-GCcUGUGGCGCUCCAG- -5'
19540 5' -60.7 NC_004685.1 + 25811 0.67 0.493867
Target:  5'- gCgGugGGC-CGGucaGCGCCGCGGGcUCu -3'
miRNA:   3'- gGgCugCCGaGCC---UGUGGCGCUCcAG- -5'
19540 5' -60.7 NC_004685.1 + 12483 0.67 0.493867
Target:  5'- aCCGuggacGCGGC-CGG-UGCCGCcaacGAGGUCg -3'
miRNA:   3'- gGGC-----UGCCGaGCCuGUGGCG----CUCCAG- -5'
19540 5' -60.7 NC_004685.1 + 255 0.67 0.493867
Target:  5'- aCCGACGacaccgacucuuGCUCGucuGCGCCGgguuCGGGGUCg -3'
miRNA:   3'- gGGCUGC------------CGAGCc--UGUGGC----GCUCCAG- -5'
19540 5' -60.7 NC_004685.1 + 13779 0.67 0.493867
Target:  5'- cCCCGAUGGCgugcUGGcccACACCGuCGgcGGGUUc -3'
miRNA:   3'- -GGGCUGCCGa---GCC---UGUGGC-GC--UCCAG- -5'
19540 5' -60.7 NC_004685.1 + 30203 0.67 0.493867
Target:  5'- gCUCGuCGGCcUGGGCGCCGCGGccaucuGGg- -3'
miRNA:   3'- -GGGCuGCCGaGCCUGUGGCGCU------CCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.