miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19541 3' -54.2 NC_004685.1 + 52272 0.66 0.87472
Target:  5'- -cGUUCGGGuucuCGUCCaGAAuCUGC-CGg -3'
miRNA:   3'- gcCAAGCCCuu--GCAGG-CUU-GACGaGC- -5'
19541 3' -54.2 NC_004685.1 + 55334 0.66 0.867001
Target:  5'- gCGGUgCGGGcacgacggguuGGCGUUCauccACUGCUCGa -3'
miRNA:   3'- -GCCAaGCCC-----------UUGCAGGcu--UGACGAGC- -5'
19541 3' -54.2 NC_004685.1 + 34499 0.66 0.859049
Target:  5'- uCGGaUUGGGAGcCGgagCCaGAACgccugGCUCGg -3'
miRNA:   3'- -GCCaAGCCCUU-GCa--GG-CUUGa----CGAGC- -5'
19541 3' -54.2 NC_004685.1 + 11846 0.66 0.859049
Target:  5'- uGGU--GGGcGCGaccgCCGAcCUGCUCGg -3'
miRNA:   3'- gCCAagCCCuUGCa---GGCUuGACGAGC- -5'
19541 3' -54.2 NC_004685.1 + 15074 0.66 0.854169
Target:  5'- aGGUggcCGGGGAgcugcuCGgugCCGAgguccgcucggguguGCUGCUCGa -3'
miRNA:   3'- gCCAa--GCCCUU------GCa--GGCU---------------UGACGAGC- -5'
19541 3' -54.2 NC_004685.1 + 4189 0.66 0.842474
Target:  5'- uCGGccagUUGGGug---CCGAACUGCUUGa -3'
miRNA:   3'- -GCCa---AGCCCuugcaGGCUUGACGAGC- -5'
19541 3' -54.2 NC_004685.1 + 56464 0.66 0.833867
Target:  5'- aGGUUCuGGAACcggCCcuuGGGCUGCUCc -3'
miRNA:   3'- gCCAAGcCCUUGca-GG---CUUGACGAGc -5'
19541 3' -54.2 NC_004685.1 + 33196 0.68 0.777323
Target:  5'- cCGGUgCGGuGGACGcgcaacCCGGucgacaaGCUGCUCGg -3'
miRNA:   3'- -GCCAaGCC-CUUGCa-----GGCU-------UGACGAGC- -5'
19541 3' -54.2 NC_004685.1 + 287 0.68 0.768474
Target:  5'- gGGUUCGGGGuCGUCguCGAACccgaUGCcCGa -3'
miRNA:   3'- gCCAAGCCCUuGCAG--GCUUG----ACGaGC- -5'
19541 3' -54.2 NC_004685.1 + 34875 0.68 0.738239
Target:  5'- aCGGcgCGuGGGugGgcaCCGcgcAGCUGCUCGg -3'
miRNA:   3'- -GCCaaGC-CCUugCa--GGC---UUGACGAGC- -5'
19541 3' -54.2 NC_004685.1 + 30659 0.69 0.704984
Target:  5'- -aGUUCGGGAugGgcagggagguggCCGAAuugagcugaauCUGCUCGg -3'
miRNA:   3'- gcCAAGCCCUugCa-----------GGCUU-----------GACGAGC- -5'
19541 3' -54.2 NC_004685.1 + 38647 0.69 0.685951
Target:  5'- aGGUcaUCGGcGAACGUCuUGGuCUGCUUGu -3'
miRNA:   3'- gCCA--AGCC-CUUGCAG-GCUuGACGAGC- -5'
19541 3' -54.2 NC_004685.1 + 54036 0.7 0.643171
Target:  5'- aGGUgugCGGGGAUGcCgCGGGCgaugGCUCGc -3'
miRNA:   3'- gCCAa--GCCCUUGCaG-GCUUGa---CGAGC- -5'
19541 3' -54.2 NC_004685.1 + 26318 0.71 0.600232
Target:  5'- gCGGUUCGGGuaggagcCGUCCu-GCUGCgCGa -3'
miRNA:   3'- -GCCAAGCCCuu-----GCAGGcuUGACGaGC- -5'
19541 3' -54.2 NC_004685.1 + 45744 0.71 0.578883
Target:  5'- gGGcUgGGGGugGUCCGcgaugaguCUGCUCGa -3'
miRNA:   3'- gCCaAgCCCUugCAGGCuu------GACGAGC- -5'
19541 3' -54.2 NC_004685.1 + 12362 0.71 0.568268
Target:  5'- gCGGcagaGGGAACGg--GAACUGCUCGa -3'
miRNA:   3'- -GCCaag-CCCUUGCaggCUUGACGAGC- -5'
19541 3' -54.2 NC_004685.1 + 131 0.72 0.516074
Target:  5'- cCGGcgCGGGcGCGgcugCCGGgguggccggggaGCUGCUCGg -3'
miRNA:   3'- -GCCaaGCCCuUGCa---GGCU------------UGACGAGC- -5'
19541 3' -54.2 NC_004685.1 + 63090 1.08 0.002367
Target:  5'- gCGGUUCGGGAACGUCCGAACUGCUCGc -3'
miRNA:   3'- -GCCAAGCCCUUGCAGGCUUGACGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.