miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19541 5' -59.1 NC_004685.1 + 49873 0.66 0.564507
Target:  5'- gGCCGGGauuuCCAGCGCagcggUCgCGGGAUCu -3'
miRNA:   3'- -CGGCUCgac-GGUCGUGg----AG-GUCCUAG- -5'
19541 5' -59.1 NC_004685.1 + 67842 0.66 0.564507
Target:  5'- aGCCGAGCUGgU--CACCgUCCcgaggucgacauGGGAUCg -3'
miRNA:   3'- -CGGCUCGACgGucGUGG-AGG------------UCCUAG- -5'
19541 5' -59.1 NC_004685.1 + 35630 0.66 0.564507
Target:  5'- cGCCGAaggGCUGgCAGCACaucaUCGGcGGUCg -3'
miRNA:   3'- -CGGCU---CGACgGUCGUGga--GGUC-CUAG- -5'
19541 5' -59.1 NC_004685.1 + 48218 0.66 0.554026
Target:  5'- gGUCGGGUUGaCCGGCGCaaaCAGGGg- -3'
miRNA:   3'- -CGGCUCGAC-GGUCGUGgagGUCCUag -5'
19541 5' -59.1 NC_004685.1 + 48901 0.66 0.554026
Target:  5'- cGCgGGGCUGCCGcGCAUCgCCGaGAUa -3'
miRNA:   3'- -CGgCUCGACGGU-CGUGGaGGUcCUAg -5'
19541 5' -59.1 NC_004685.1 + 30472 0.66 0.552981
Target:  5'- cGCCGaAGCcGCCgccaggcGGCGCguggagcgUUCCGGGGUCc -3'
miRNA:   3'- -CGGC-UCGaCGG-------UCGUG--------GAGGUCCUAG- -5'
19541 5' -59.1 NC_004685.1 + 38231 0.66 0.543605
Target:  5'- uGCCGcuGCUGCCGuaACCgCCGGuGUCg -3'
miRNA:   3'- -CGGCu-CGACGGUcgUGGaGGUCcUAG- -5'
19541 5' -59.1 NC_004685.1 + 29096 0.66 0.543605
Target:  5'- cGCCGAGggaaccgGCC-GCGCCggcCCAGGugGUCg -3'
miRNA:   3'- -CGGCUCga-----CGGuCGUGGa--GGUCC--UAG- -5'
19541 5' -59.1 NC_004685.1 + 12434 0.66 0.543605
Target:  5'- cGCCGAGaaggcggcaGCCcuGCGCC-CCuGGGUCg -3'
miRNA:   3'- -CGGCUCga-------CGGu-CGUGGaGGuCCUAG- -5'
19541 5' -59.1 NC_004685.1 + 28883 0.66 0.533248
Target:  5'- cGCCGcaaggcGCUGaCCGGcCGCCggaaCCAGGAcuUCg -3'
miRNA:   3'- -CGGCu-----CGAC-GGUC-GUGGa---GGUCCU--AG- -5'
19541 5' -59.1 NC_004685.1 + 43649 0.66 0.522963
Target:  5'- cGCCGucGCUGCCgcggugaaguGGCACCgcgaacGGAUCg -3'
miRNA:   3'- -CGGCu-CGACGG----------UCGUGGaggu--CCUAG- -5'
19541 5' -59.1 NC_004685.1 + 22928 0.67 0.512755
Target:  5'- gGCCGAuGacgGCCAGCACCcCCAGc--- -3'
miRNA:   3'- -CGGCU-Cga-CGGUCGUGGaGGUCcuag -5'
19541 5' -59.1 NC_004685.1 + 39397 0.67 0.508695
Target:  5'- cGCCGgaGGCcagguugucguagGUCGGCGCCgcgCCAGGAg- -3'
miRNA:   3'- -CGGC--UCGa------------CGGUCGUGGa--GGUCCUag -5'
19541 5' -59.1 NC_004685.1 + 68374 0.67 0.50263
Target:  5'- uCCGAGUgUGCguGCGCC-CCGGG-UCc -3'
miRNA:   3'- cGGCUCG-ACGguCGUGGaGGUCCuAG- -5'
19541 5' -59.1 NC_004685.1 + 68326 0.67 0.50263
Target:  5'- uCCGAGUgUGCguGCGCC-CCGGG-UCc -3'
miRNA:   3'- cGGCUCG-ACGguCGUGGaGGUCCuAG- -5'
19541 5' -59.1 NC_004685.1 + 14188 0.67 0.50263
Target:  5'- cGCCGGGCUGUCGGUGa--CCAaGGUCg -3'
miRNA:   3'- -CGGCUCGACGGUCGUggaGGUcCUAG- -5'
19541 5' -59.1 NC_004685.1 + 48112 0.67 0.498604
Target:  5'- cGUCGccGCUGcCCAGCGCCgccgacaugaccaCCGGGAUa -3'
miRNA:   3'- -CGGCu-CGAC-GGUCGUGGa------------GGUCCUAg -5'
19541 5' -59.1 NC_004685.1 + 68291 0.67 0.496597
Target:  5'- aGCCGAgGCgacgaggcgaucgaGaCCAGCACCggcggCAGGAUCa -3'
miRNA:   3'- -CGGCU-CGa-------------C-GGUCGUGGag---GUCCUAG- -5'
19541 5' -59.1 NC_004685.1 + 59264 0.67 0.492593
Target:  5'- aCCGGGCgaacgugGUCuGCACCUCCugugAGGAc- -3'
miRNA:   3'- cGGCUCGa------CGGuCGUGGAGG----UCCUag -5'
19541 5' -59.1 NC_004685.1 + 50325 0.67 0.492593
Target:  5'- -gCGGGCUGCCGGgGCCgacuucgCCGcGGcgCa -3'
miRNA:   3'- cgGCUCGACGGUCgUGGa------GGU-CCuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.