miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19542 3' -52.2 NC_004685.1 + 61840 0.66 0.920439
Target:  5'- cCACGAGGCUCGggugCgcagUCGGcUGUaGCAGCg -3'
miRNA:   3'- -GUGCUCUGAGCa---G----AGCU-ACGgUGUUG- -5'
19542 3' -52.2 NC_004685.1 + 2929 0.66 0.914247
Target:  5'- gGCGGGccaguuCUUgGUCUgGAUGCaCGCAGCg -3'
miRNA:   3'- gUGCUCu-----GAG-CAGAgCUACG-GUGUUG- -5'
19542 3' -52.2 NC_004685.1 + 49896 0.66 0.894018
Target:  5'- uCGCGGGAuCUUGcgauucuggcUCUCGAUGCCGuugaaGGCg -3'
miRNA:   3'- -GUGCUCU-GAGC----------AGAGCUACGGUg----UUG- -5'
19542 3' -52.2 NC_004685.1 + 49975 0.67 0.871389
Target:  5'- cCACGAGAUguggccgaaCGcCUCGGcccGCCACGGCc -3'
miRNA:   3'- -GUGCUCUGa--------GCaGAGCUa--CGGUGUUG- -5'
19542 3' -52.2 NC_004685.1 + 33757 0.67 0.863336
Target:  5'- gGCGAGACguggugCGUCgucgCGGgugucgGCgACAGCg -3'
miRNA:   3'- gUGCUCUGa-----GCAGa---GCUa-----CGgUGUUG- -5'
19542 3' -52.2 NC_004685.1 + 58494 0.67 0.863336
Target:  5'- aCGCGuuGAacaucgcaUCGUgCUCGAUGCaCGCGGCg -3'
miRNA:   3'- -GUGCu-CUg-------AGCA-GAGCUACG-GUGUUG- -5'
19542 3' -52.2 NC_004685.1 + 31801 0.68 0.84651
Target:  5'- aCACGAcGAC-CGUCUCGccGaCGCGGCu -3'
miRNA:   3'- -GUGCU-CUGaGCAGAGCuaCgGUGUUG- -5'
19542 3' -52.2 NC_004685.1 + 17272 0.68 0.800633
Target:  5'- gCugGAGGgUCGUCg----GCCACGGCu -3'
miRNA:   3'- -GugCUCUgAGCAGagcuaCGGUGUUG- -5'
19542 3' -52.2 NC_004685.1 + 48031 0.69 0.790883
Target:  5'- cCACGGGGCUguacggcccacCGUCggUGAUGCCcuCGACg -3'
miRNA:   3'- -GUGCUCUGA-----------GCAGa-GCUACGGu-GUUG- -5'
19542 3' -52.2 NC_004685.1 + 33175 0.7 0.707826
Target:  5'- aCACGuucucGCUgGUCUCGGU-CCACGACg -3'
miRNA:   3'- -GUGCuc---UGAgCAGAGCUAcGGUGUUG- -5'
19542 3' -52.2 NC_004685.1 + 48880 0.72 0.608898
Target:  5'- aACGGuACUCGacCUCGGUGCCGCGGg -3'
miRNA:   3'- gUGCUcUGAGCa-GAGCUACGGUGUUg -5'
19542 3' -52.2 NC_004685.1 + 26517 0.72 0.608898
Target:  5'- gACGGuguGCUCGUCUCGccGCCGCAc- -3'
miRNA:   3'- gUGCUc--UGAGCAGAGCuaCGGUGUug -5'
19542 3' -52.2 NC_004685.1 + 44188 0.72 0.608898
Target:  5'- gACGAGAUU-GUCUCGAUGgCCGaGACg -3'
miRNA:   3'- gUGCUCUGAgCAGAGCUAC-GGUgUUG- -5'
19542 3' -52.2 NC_004685.1 + 2754 0.73 0.532644
Target:  5'- aGCGu--CUCGUCgggcaCGGUGCCGCGGCg -3'
miRNA:   3'- gUGCucuGAGCAGa----GCUACGGUGUUG- -5'
19542 3' -52.2 NC_004685.1 + 6009 0.75 0.440314
Target:  5'- -uCGAGGCguc-CUCGAUGCCGCGGCg -3'
miRNA:   3'- guGCUCUGagcaGAGCUACGGUGUUG- -5'
19542 3' -52.2 NC_004685.1 + 18248 0.75 0.421038
Target:  5'- gCACGGuGCUCGcacCGAUGCCGCAGCa -3'
miRNA:   3'- -GUGCUcUGAGCagaGCUACGGUGUUG- -5'
19542 3' -52.2 NC_004685.1 + 63640 1.1 0.002298
Target:  5'- uCACGAGACUCGUCUCGAUGCCACAACa -3'
miRNA:   3'- -GUGCUCUGAGCAGAGCUACGGUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.